Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0091 ATGTATGGTGGCGCACACCACAGCAGATCTTTAAATTCTTCTCCTTCGAAGATCAATTCTCCGGTTCTTCATCCATCAAAAACCCTAACCACATTCTCTCTCACCTCACTCTCCTACTCTTCTCAATCTGTTACTCCCATGAGCTATTACATGAATAATGAAGATACACGCAGAGGTTTGAAAAGAAAGCCCCCATATATGGATCGAGGGCATGAACGGGGACCTTACAATATGAATTCTAGACCTTATGATAGGAACATGGTTCCTGATGGTTGGTTTGACTGCCCAGCACATGGACAAGAATTAGGACGCATAATCCCTTCAAAGGTTCCACTTGGTGAATCCTTCAATGATAACATTCCACATGAAAAATATACTCCCAAACAAGCGATTCATCAACAGAGAGTCTTAGGTCGGGAACTTGGTTTAGTGATTGATCTGACAAATACTACTCGTTATTATCCTCTATCAGATTGGACAAAAGAAGGAATTGCTCATGTCAAGATAAGATGCAAAGGAAGAGATGCTGTACCTGATGATCAATCTGTACAAAAATTCTGTGATGAGGTTCAAGATTTTTGCTCCCAAAGAACAAATGAAAAGAAGTATATACTTGTACATTGTACCCATGGGCATAATCGCACAGGTTATATGATTGTTCACTTTCTTGTGCGTACGAAATCTATATCTGTTACCGAGGCGATAAATAAATTTGCTTTGGCACGTCACCCAGGAATTTACAAGCAGGACTATATTGACGCCCTGTACATGTTTTATCGTGAAAAGAAACCTGAAGATCTCGTTTGTCCTCAAACTCCTGAATGGAAGAGAACTTCGGATCCTGATTATCGTGGCCCAACTGTCCCGGCCGTGGACAATTATGGGCACATTCCAGAACAGGAGAATATAGTCAGAAATGAAGTATTGACAACTGACGATGTTTTGGGAGATCCAATTCCTCCAAATCAGCTGCGAGCGATGCAAGAAGTTTGTTACCAACTGCTCAAGTTGAACACCGGGGGAAGAGGACGATTGCAGTTTCCTGGATCACACCCTGTTTCTCTGAACAGGGAAAACCTGCAACTCTTGAGACAACGATATTATTATGCCACATGGAAAGCTGATGGGACACGCTATATGATGCTGATTACTTGTGATGAATGTTATTTGATTGACAGAAAATTTCTTTTCCACAGGATCAATATGCGATTTCCTTGCAGATATTCAAATGGGGGTACACCTGAGAGGAATCACCACTACACATTACTTGATGGGGAGATGATTATTGACAGGGATCCACACACACATAAGCAAGAGAGAAGATACCTCATCTATGATTTGATGGCAATCAATCAGGTCTCTTTGATAGAGCTGCCGTTTTATGAAAGGTGGAGATTGCTGGAGAAAGAAGTAATTGAACCTCGTAACATGGAGCGTGAGGGTCTTTCAAAAAATACGGATCCTTATTATAGATATGACTTGGAACCATTTAGTGTGAGAAGGAAGGGATTTTGGTTACTATCCACTGTATCCAAGCTCCTACATAAGTTCATTCCACAACTATCGCATTCATCAGACGGTCTTGTATTCCAGGGTTGGGATGATCCATATGTCCCTCGCACACATGAAGGTCTTCTGAAGTGGAAATACCCCGAGATGAACTCTGTGGATTTCCTCTGTGAGGTGGGAGCTGGTGATCGTCCCATGCTTTTTCTGTTTGAACGTGGACGGAAGAAGTTCATGGAAGAGAATGTTATCTTTAAAGATGCATCAGACATTTCTTCCTATTCCGGAAAGATCATTGAATGCTACTGGGATTCCGGGGAGCATCATTGGGTCTGTATGCGGATAAGAATAGACAAAGCAACTCCGAATGATATCAATACCTATAGAAAGGTAATGCGAAGCATAAAGGATAACATCACTGAAGAAGTCTTATTGAATGAGATCAATGAGACAATTTGCCTACCCTTGTATGCAGACAGAATACAAAAGGATATCAAGGCTCATCAGCATATGGTCTCCTCAAGGCGCAAATACTGA 2043 0.4151 MYGGAHHSRSLNSSPSKINSPVLHPSKTLTTFSLTSLSYSSQSVTPMSYYMNNEDTRRGLKRKPPYMDRGHERGPYNMNSRPYDRNMVPDGWFDCPAHGQELGRIIPSKVPLGESFNDNIPHEKYTPKQAIHQQRVLGRELGLVIDLTNTTRYYPLSDWTKEGIAHVKIRCKGRDAVPDDQSVQKFCDEVQDFCSQRTNEKKYILVHCTHGHNRTGYMIVHFLVRTKSISVTEAINKFALARHPGIYKQDYIDALYMFYREKKPEDLVCPQTPEWKRTSDPDYRGPTVPAVDNYGHIPEQENIVRNEVLTTDDVLGDPIPPNQLRAMQEVCYQLLKLNTGGRGRLQFPGSHPVSLNRENLQLLRQRYYYATWKADGTRYMMLITCDECYLIDRKFLFHRINMRFPCRYSNGGTPERNHHYTLLDGEMIIDRDPHTHKQERRYLIYDLMAINQVSLIELPFYERWRLLEKEVIEPRNMEREGLSKNTDPYYRYDLEPFSVRRKGFWLLSTVSKLLHKFIPQLSHSSDGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFLCEVGAGDRPMLFLFERGRKKFMEENVIFKDASDISSYSGKIIECYWDSGEHHWVCMRIRIDKATPNDINTYRKVMRSIKDNITEEVLLNEINETICLPLYADRIQKDIKAHQHMVSSRRKY* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0091 680 ProSitePatterns Tyrosine specific protein phosphatases active site. 206 216 IPR016130 GO:0016311|GO:0016791
Vra3g0091 680 Gene3D Protein tyrosine phosphatase superfamily 66 282 IPR029021 -
Vra3g0091 680 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 88 277 IPR029021 -
Vra3g0091 680 Pfam mRNA capping enzyme, catalytic domain 351 549 IPR001339 GO:0004484|GO:0005524|GO:0006370
Vra3g0091 680 Pfam mRNA capping enzyme, C-terminal domain 571 647 IPR013846 -
Vra3g0091 680 MobiDBLite consensus disorder prediction 7 23 - -
Vra3g0091 680 MobiDBLite consensus disorder prediction 1 23 - -
Vra3g0091 680 SUPERFAMILY Nucleic acid-binding proteins 552 661 IPR012340 -
Vra3g0091 680 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 184 253 IPR000387 GO:0016311|GO:0016791
Vra3g0091 680 Gene3D DNA ligase/mRNA capping enzyme 302 547 - -
Vra3g0091 680 MobiDBLite consensus disorder prediction 57 81 - -
Vra3g0091 680 PANTHER MRNA-CAPPING ENZYME-LIKE 48 679 - -
Vra3g0091 680 PANTHER MRNA-CAPPING ENZYME 48 679 - -
Vra3g0091 680 SMART dsp_5 116 261 IPR020422 GO:0006470|GO:0008138
Vra3g0091 680 Pfam Dual specificity phosphatase, catalytic domain 140 260 IPR000340 GO:0008138|GO:0016311
Vra3g0091 680 Gene3D - 548 654 IPR012340 -
Vra3g0091 680 PIRSF mRNA_capping_HCE 76 680 IPR017074 GO:0004484|GO:0006370|GO:0140818
Vra3g0091 680 CDD Adenylation_mRNA_capping 322 550 IPR001339 GO:0004484|GO:0005524|GO:0006370
Vra3g0091 680 CDD RNA_5'-triphosphatase 91 257 - -
Vra3g0091 680 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 327 550 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0091 77 669 Protein tyrosine phosphatase (PTP) family AT3G09100 62.791 0.0 777
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0091 K13917 - gmx:100793183 1190.64