Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0089 ATGACGATGTCAGTGATGTGTAGACCAACACATCAGGCTCTGAAAAACGTTCCTTCCGGTGGACAAAGCCAGATGATGAGGCCAAAAGAGAAGGTGGTGCTGGTCATGGGAGCAACGGGGAGCGGGAAAACCAGGTTGTCGGTGGACTTAGCAACATGTTTTCCCTCAGAAATCATAAACTCTGACAAAATGCAAGTGTACGAAGGGCTTCAGATTGTCACCAACAAGGCCACCAAAGAGGAGCAGCGTGGGGTCCCACATCACCTCCTGGGGACGCAGAACCCCGACACGGAGTTCACGGCCTCCGACTTCTGCGACGCCGCTTCACGCGCCATCGAGTCCATAACGCGCCGCGACAAGGTCCCGATAGTGGTGGGAGGATCCAACTCGTACATGGAGGCGCTGGTGGATAGGTTCGGGCCGCGGTTCGAGTGGTGCTTTCTGTGGGTCGACGTGTCCGTGCCAGTGCTCTATTCCTACGTGGGCCAGCGCGTGGACCACATGCTCCGATGTGGAATGGTGAACGAGTTGAGACCGTTTTTCAACGTGAACGGCGATTACTCACGCGGGATAAGGAAGGCAATTGGGGTTTCTGAATTTCACCCGTACTTCCGGCGGGAGGCGACGGCGAGCGGTGAGACGAGGATGAGGCTGCTGCAGGAGGCGGTGAGGGACGTGAAGGGGAACACGTGCGACTTGGCACGCAAGCAACTTGGGAGAATCCACATGCTCCGAAGTGAAGGGTGGAAGATCCACCGCATTTGCGCCACGCCCGTGTTTCAGAAACGTGGCCGCGACGCCAACGAGGCTTGGAACAACATGGTGGCGCAACCCTGTGCCTCCATTGTTTCTCAGTTTCTCTACAGTTCTGCCAATTCTGCTTCTGGGAGAGTCGCACCTTCTATGCAACCAAACTAA 918 0.5632 MTMSVMCRPTHQALKNVPSGGQSQMMRPKEKVVLVMGATGSGKTRLSVDLATCFPSEIINSDKMQVYEGLQIVTNKATKEEQRGVPHHLLGTQNPDTEFTASDFCDAASRAIESITRRDKVPIVVGGSNSYMEALVDRFGPRFEWCFLWVDVSVPVLYSYVGQRVDHMLRCGMVNELRPFFNVNGDYSRGIRKAIGVSEFHPYFRREATASGETRMRLLQEAVRDVKGNTCDLARKQLGRIHMLRSEGWKIHRICATPVFQKRGRDANEAWNNMVAQPCASIVSQFLYSSANSASGRVAPSMQPN* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0089 305 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 23 292 IPR039657 -
Vra3g0089 305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 149 IPR027417 -
Vra3g0089 305 MobiDBLite consensus disorder prediction 1 25 - -
Vra3g0089 305 Pfam IPP transferase 65 141 - -
Vra3g0089 305 Pfam IPP transferase 142 238 - -
Vra3g0089 305 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 154 251 - -
Vra3g0089 305 Gene3D - 29 287 IPR027417 -
Vra3g0089 305 MobiDBLite consensus disorder prediction 1 23 - -
Vra3g0089 305 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 23 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0089 Vra-Chr3 960319 961658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0089 142 294 C2H2 Transcription Factor Family AT2G27760 30.939 5.97e-18 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0089 K10760 - gmx:100777757 483.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0089 3 960319 961658 Vra3g0089 3 960319 961658 ECH
Vra3g0089 3 960319 961658 Vra8g1157 8 26589881 26591152 PCT