Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0068 ATGCCACTGTTCCAGATCCTTGTCACCATCTTCCTCACTCTCCCTGCGCTTTCCCTCTCCGATTCCTGTCCTCTCAACTTCCACCTCGTCCGTTCGAGACCCTCATCAGACTCCAAGACACGGTGTCATTACATCCTCCAATCCCTTCGTATTCTTCAATCCGATTACCTCCACCGCACCGGTTCCTTCCCTCCTTCCAACGCCTCCTTCTCCTGCTGGACCGCTCTCCAAGATCACACCCACCAATACGACATTCGTTCCTCCTGCAACCTCCCTTCCTCTTCCTTTTCCCTCTCCTGCAACAACATCACCAACCAATCCCAATTCGAGGACCTTTTGCCTCTCTCAGCCAAACAAGTATGGAATACTTGTAACCATTCTCTAAACAGTCTCTCATCTTGTGCTCTCTGCACCAAAGCTTTGTCCAACTTGGATTCCCATCTCACGGACAATACCACTGACTGCAAGACTATTGCTTCTATCTATGCTGCTTCCTTCTCCGACCTGCAAGACCCCAGAACTGCTGATTGTCTGTTCAACTCTGATTTTCCTTCTTCGGTTTCAACTGGTAAGCGTCGAAACATTCTTATTGCGGCTTTTTGTACGCTGGCCTTCTTCTTGTTGGTCTTTGGTGTTTTTTGGGCTTACTTTAGATTGAAGCAGAAGAATAAGGCTATTTGTAAAACTGAGATGGGTTTGAGTTCTGGGTTGGATTCTGTGAACCAGACTACTACTTTGATTAGGTTCACTTTTGATGAGATTAAAAAGGCTACTAGGAATTTCGCCGGTGATAACATAATTGGGAAGGGGGCTTATGGGAATGTTTATAGAGGGATGCTGGTTGATGGGACTCAGGTTGCATTGAAAAGGTTTAAGAATTGTTCTGTTGCTGGGGATCCTAGCTTCACTCATGAAGTTGAGGTTATTGCGAGCGTTAGGCATGTGAACCTTGTTGGCTTAAGAGGATATTGTACTGCTACAACTAACTTAGAGGGTCACCAGAGGATTATTGTCACTGATTTGATGGAGAATGGGAGCGTTTATGATCATTTATTTGGTTCTGCTAAGCAGAAACTCAGTTGGCCAATTCGTCTAAAGATTGCTCTAGGCACTGCTAGGGGGTTGGCTTATTTGCACTATGGGGCTCAACCTTCCATCATCCATAGGGATATTAAAGCTAGTAACATACTTCTGGACCACAAATTTGAAGCCAAGGTAGCAGATTTTGGGTTAGCGAAGTTCAAACCTGAGGGAATAACCCATATGAGCACTAGAGTGGCTGGAACCATGGGGTATGTCGCACCTGAGTATGCTTTGTATGGACAGTTGACTGAGAGAAGTGATGTGTTCAGTTTTGGGGTTGTGCTTCTCGAGCTTTTGAGTGGGAAAAGGGCTCTTGAAATTGACACTGATGGGCAACCCTCTGCAGTAACTGACTTTGCTTGGTCAATGGTTAGGAATGGTAGAGCTTTGGATGTTATTGAAGATGGTATGCCAGAACTTGGTCCAATAGAAATTCTTGAGAAGTATGTATTGGTTGCTATACTATGTTGTCATCCTCAACTACATGCTAGGCCAACAATGGACCAGGTTGTTAAAATGCTAGAGACGGAGGAATCAGTGTCCTCATTATCTTGTGTTGCTGGGAAGATTGATACTGAGAAATCTGTGTAG 1674 0.4498 MPLFQILVTIFLTLPALSLSDSCPLNFHLVRSRPSSDSKTRCHYILQSLRILQSDYLHRTGSFPPSNASFSCWTALQDHTHQYDIRSSCNLPSSSFSLSCNNITNQSQFEDLLPLSAKQVWNTCNHSLNSLSSCALCTKALSNLDSHLTDNTTDCKTIASIYAASFSDLQDPRTADCLFNSDFPSSVSTGKRRNILIAAFCTLAFFLLVFGVFWAYFRLKQKNKAICKTEMGLSSGLDSVNQTTTLIRFTFDEIKKATRNFAGDNIIGKGAYGNVYRGMLVDGTQVALKRFKNCSVAGDPSFTHEVEVIASVRHVNLVGLRGYCTATTNLEGHQRIIVTDLMENGSVYDHLFGSAKQKLSWPIRLKIALGTARGLAYLHYGAQPSIIHRDIKASNILLDHKFEAKVADFGLAKFKPEGITHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGKRALEIDTDGQPSAVTDFAWSMVRNGRALDVIEDGMPELGPIEILEKYVLVAILCCHPQLHARPTMDQVVKMLETEESVSSLSCVAGKIDTEKSV* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0068 557 Gene3D Transferase(Phosphotransferase) domain 1 342 549 - -
Vra3g0068 557 Pfam SPARK 20 153 IPR043891 -
Vra3g0068 557 SUPERFAMILY Protein kinase-like (PK-like) 238 536 IPR011009 -
Vra3g0068 557 SMART serkin_6 261 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0068 557 ProSiteProfiles Protein kinase domain profile. 261 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0068 557 ProSitePatterns Protein kinases ATP-binding region signature. 267 289 IPR017441 GO:0005524
Vra3g0068 557 ProSitePatterns Serine/Threonine protein kinases active-site signature. 386 398 IPR008271 GO:0004672|GO:0006468
Vra3g0068 557 PANTHER OS01G0750732 PROTEIN 18 542 - -
Vra3g0068 557 Gene3D Phosphorylase Kinase; domain 1 224 340 - -
Vra3g0068 557 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RKF3-RELATED 18 542 - -
Vra3g0068 557 Pfam Protein tyrosine and serine/threonine kinase 265 535 IPR001245 GO:0004672|GO:0006468
Vra3g0068 557 CDD STKc_IRAK 267 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0068 Vra-Chr3 765070 767485 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0068 1 539 Receptor kinase-like Gene Family AT2G48010 57.041 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vra3g0068 PK_Tyr_Ser-Thr 1.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0068 - - vun:114194863 951.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0068 3 765070 767485 Vra8g1179 8 26905025 26907831 PCT