Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0067 ATGTCCCTTCCCTTTTATTTCTCCCTCTGTTTTGTTTTATCTCTTTCATTCATTCTTCCGCCTCCTTCTCTGGCCGTCAACGACACCGTTCCGTGTCCCTTGAACATCACGGTGCTCCGCGTGGTGGGCGGCGGCGCCCGGCCCTCCTTCGATTCCGGCACTCAGTGCCATTACATTTTGCAGGCGCTCCACCTCCTCCAGGCGGACTACCTCCGCCGCAGCAACCTCTTCGTGCCGCCGCTCAACGCCTCCGAGTCCTGCTGGACCTCCTTCCAGTCCTTCATCAACGAATTCGACCCGAACATCGATATCCGCTCTTCCTGCGGCCTCAAAACAGAGTGGATCTCCCAGGGCTGCATGAACATCACCACCAAACAGCAGTTCGAAGTCACCGCCCCCACCGCCGCAATCCAGGCCGTCCAAGGCGACTGCAACCAGTCCCTCGATAACAACGCCCCCTGCGCCCTCTGCACCACCAAAATCTCCAGCCTTCTCTCCTACTTTACCGGCCCAACCGTCGGGAACGTCTCCGATTGCCGAGCCTATACTTCCATCTACGCCGCTTCTCTCTCTGACCAGTATGGTGCCACTGACCCCGGAACCGCCAAGTGTCTCTTCGGCCTCGATTTTTCCTCCCCCGGTTCCAGCGGTAAGCGCCGAACCATCGTTATCGTCGTTTCCGTTTTCTGTTTTGTGGCTTTGCTTGTTCTTGCTGGGGTTTGGACTTACATTAGATTCAACAAGAGAAAGGAGTTTGCGGGAGGGAAGGGTGTTGGAAAATCTGAACTTGGTTTGGGTTTGGGTTCTGGGTTGGATTCCATGAACCAGAGTACGACTTTGATTAGGTTCACTTTTGATGAGATTAAGAAGGCTACTAGGAACTTCTCTAGGGATAACATGATCGGGAGTGGGGGTTATGGGAACGTTTACAAAGGAATGTTGCTGGATGGTAGTCCAGTTGCTTTTAAAAGGTTCAAGAATTGTTCTGTTGCCGGGGATGCTAGTTTCACTCACGAAGTTGAGGTTATTGCGAGTGTTCGCCATGTGAACCTTGTTACCTTAAGAGGTTATTGTACTGCCACCACCAATTTAGAGGGGCACCAGAGGATTATTGTCACTGATTTGATGGAAAATGGGAGTCTTTACGATCATTTGTTTGGTTCTTCCAAGAAGAATCTCAGTTGGCCTATTCGTCAAAAGATTGCTCTGGGGACCGCTAGAGGATTGGCTTATTTGCATTACGGGGCTCAACCTTCCATCATTCATAGAGATATTAAAGCTAGTAACATACTTCTGGACCATAAGTTTGAGGCCAAGGTGGCGGATTTCGGGTTGGCGAAGTTCAATCCAGAGGGAATGACGCATATGAGCACTAGAGTGGCTGGGACTATGGGGTATGTTGCTCCTGAGTATGCCTTGTATGGACAGTTGACAGAGAGAAGTGATGTGTTCAGTTATGGTGTGGTGCTTCTTGAGCTTTTGAGTGGGAAAAAGGCTCTTCAAACGAACGATGATGGGCAACCCTCTGCACTCACTGACTTTGCTTGGTCTTTGGTTAGAAACGGTAGTGCTCTGGATGTTGTTGAAGATGGCATTCCAGAGCCTGGTCCACCAGAAGTTCTTGAGAAGTATGTGTTGATTGCTGTGTTGTGTTCTCATCCACAGCTCTATGCTAGACCAACAATGGACCAGGTTGTTAAAATGCTGGAGACAGATGAATCGGTTCCTTCGTTAATGGATAGGCCAATTCCTTTTATTGCTGGGAGGATTGACATTGAAAAATCTGCTCTCAGTAACTCCGGTCAGCTCTGCAGTCCAACCGGTTATCAAGCTTATACATTACAAAATCAACGCAAATCTATTTGTAAAGAAGATGAGGAAGAAGAAGGAAGTTCAGTGGCTGATACTGTTACCACAGAATGA 1923 0.4919 MSLPFYFSLCFVLSLSFILPPPSLAVNDTVPCPLNITVLRVVGGGARPSFDSGTQCHYILQALHLLQADYLRRSNLFVPPLNASESCWTSFQSFINEFDPNIDIRSSCGLKTEWISQGCMNITTKQQFEVTAPTAAIQAVQGDCNQSLDNNAPCALCTTKISSLLSYFTGPTVGNVSDCRAYTSIYAASLSDQYGATDPGTAKCLFGLDFSSPGSSGKRRTIVIVVSVFCFVALLVLAGVWTYIRFNKRKEFAGGKGVGKSELGLGLGSGLDSMNQSTTLIRFTFDEIKKATRNFSRDNMIGSGGYGNVYKGMLLDGSPVAFKRFKNCSVAGDASFTHEVEVIASVRHVNLVTLRGYCTATTNLEGHQRIIVTDLMENGSLYDHLFGSSKKNLSWPIRQKIALGTARGLAYLHYGAQPSIIHRDIKASNILLDHKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSYGVVLLELLSGKKALQTNDDGQPSALTDFAWSLVRNGSALDVVEDGIPEPGPPEVLEKYVLIAVLCSHPQLYARPTMDQVVKMLETDESVPSLMDRPIPFIAGRIDIEKSALSNSGQLCSPTGYQAYTLQNQRKSICKEDEEEEGSSVADTVTTE* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0067 640 SMART serkin_6 295 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0067 640 CDD STKc_IRAK 301 570 - -
Vra3g0067 640 PANTHER RECEPTOR-LIKE KINASE IN IN FLOWERS PROTEIN 26 622 - -
Vra3g0067 640 Gene3D Phosphorylase Kinase; domain 1 269 374 - -
Vra3g0067 640 Gene3D Transferase(Phosphotransferase) domain 1 376 578 - -
Vra3g0067 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672|GO:0006468
Vra3g0067 640 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524
Vra3g0067 640 SUPERFAMILY Protein kinase-like (PK-like) 277 578 IPR011009 -
Vra3g0067 640 Pfam SPARK 29 176 IPR043891 -
Vra3g0067 640 ProSiteProfiles Protein kinase domain profile. 295 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0067 640 PANTHER OS01G0253100 PROTEIN 26 622 IPR045271 GO:0004714|GO:0006468
Vra3g0067 640 Pfam Protein kinase domain 296 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0067 Vra-Chr3 753295 755833 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0067 17 614 Receptor kinase-like Gene Family AT2G48010 61.360 0.0 744
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vra3g0067 Pkinase 2.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0067 - - gmx:100819453 1095.49