Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0066 ATGGGGGACGAGGTGGATTCCCCTGTTGGTGTTCTTGAGGATTATTTTTTCAAGAGTTCAGAATCAGAAACTAGTTCTTCCAAAGAACCTGGTACTACGGATTCTGATAAGTCAAAGCCCGGTTCTAGATGGCGTGCGTTTCTTCAATTGTTGAGGGTCAAATCGAAGAAGCCGGTGGCCACATTGTATCCTCTAAGTGTCCTCAAACTCTCCAGAAGATTCACCAGTAGCATGAGGGAGACTGTCATAGATGCTTCTTCCTTTCATAGTTCACCCTGGAAGATCTTCACTCACCATGAGATCCAAATTGCAACCAATTACTTCGCCCAAGAAAATTGTATTGGAAAAGGTGGTTATGCTGAGGTTTACAAAGGGTGTTTGCTAAATGGTCAGCTGGTGGCGATTAAACGATTGGCACGTGGAGCAGAAAACGAAACTATAGGGGATTTCTTATCAGAACTTGGCATAATGGCTCATGTAAACCATCCCAATACTGCTAAATTAGTTGGCTATGGAGTGGAGGGAGGAATGCATTTGGTGCTTGAGTTGTCTGAAAAAGGGTGCTTAGCTTCAGTGCTGAATGGTTCCAAGGAGAAGCTACCATGGCCTGTTAGGCAGAAAATAGCATTAGGAACAGCCAAGGGTATATTGTATCTTCACGAAGGCTGTCAAAGAAGAATTATTCACAGAGATATAAAAGCATCAAATATCTTGCTTACTGAGGACTTTGAGCCGCAGATTTGTGATTTCGGGCTAGCAAAATGGCTACCAGAGAATTGGACCCACCACACCGTTTCAAAAATCGAAGGGACTTTTGGTTACCTTGCTCCAGAATACTTGCTTCATGGGATTGTGGATGAGAAAACAGATGTTTTTGCCTTTGGTGTAGTGCTATTAGAATTAGTGACTGGGCGAAGAGCACTTGATTATTCACAACAAAGCCTTGTTTTGTGGGCAGAACCTTTTCTGAAAAAGAATAATATCAGGGAGCTGATTGATCCTTCACTTGATGATGTTTTTGACTGCCGGCAGATTAAAATTATGCTTTACACAGCTTCTTTATGCATTCAACAATCCTCTATTCGTCGCCCCTCTATGAACCAGGTTGTACAGCTTCTGAATGGTAACGTTAGCTGCTCTAGCTTCACCAAGAAATCTCAACTTCCATTCACTCGAAGGGACTTTCTAGAAGAGTTCATTGATTCTGATTAA 1212 0.4233 MGDEVDSPVGVLEDYFFKSSESETSSSKEPGTTDSDKSKPGSRWRAFLQLLRVKSKKPVATLYPLSVLKLSRRFTSSMRETVIDASSFHSSPWKIFTHHEIQIATNYFAQENCIGKGGYAEVYKGCLLNGQLVAIKRLARGAENETIGDFLSELGIMAHVNHPNTAKLVGYGVEGGMHLVLELSEKGCLASVLNGSKEKLPWPVRQKIALGTAKGILYLHEGCQRRIIHRDIKASNILLTEDFEPQICDFGLAKWLPENWTHHTVSKIEGTFGYLAPEYLLHGIVDEKTDVFAFGVVLLELVTGRRALDYSQQSLVLWAEPFLKKNNIRELIDPSLDDVFDCRQIKIMLYTASLCIQQSSIRRPSMNQVVQLLNGNVSCSSFTKKSQLPFTRRDFLEEFIDSD* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0066 403 Pfam Protein kinase domain 110 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0066 403 PANTHER OS08G0249100 PROTEIN 4 401 - -
Vra3g0066 403 ProSiteProfiles Protein kinase domain profile. 108 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0066 403 SUPERFAMILY Protein kinase-like (PK-like) 88 373 IPR011009 -
Vra3g0066 403 MobiDBLite consensus disorder prediction 17 41 - -
Vra3g0066 403 SMART serkin_6 108 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0066 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Vra3g0066 403 PANTHER PROTEIN KINASE FAMILY PROTEIN 4 401 - -
Vra3g0066 403 Gene3D Phosphorylase Kinase; domain 1 69 182 - -
Vra3g0066 403 Gene3D Transferase(Phosphotransferase) domain 1 185 388 - -
Vra3g0066 403 ProSitePatterns Protein kinases ATP-binding region signature. 114 136 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0066 Vra-Chr3 744267 747346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0066 96 375 Receptor kinase-like Gene Family AT1G53420 43.056 7.12e-71 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vra3g0066 Pkinase 1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0066 - - gmx:100818913 686.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0066 3 744267 747346 Vra8g1180 8 26931338 26935148 PCT