Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0050 ATGAACAACACCTCCACCCACGACTTCATGAACGTCGACTCTTTCTCTCAGCTCCCCTTCCTCCGTCCCTCTCCTTCCAAAGATAAAGACAAATCCATTCGTCTCTTTGGTCAGGATTTCTCTCACGCCTCCAAAACCACCCATTCACCCTCCGACAACCACCACCACCACACCATCAATACACAAAACTCCGAGCCCACCCGCAGATTCGAGTGCCATTACTGTTGCAGAAACTTTCCTACTTCTCAAGCCTTAGGCGGTCACCAAAACGCCCACAAACGAGAACGCCAACACGCCAAACGACACCTCCACTCAGCCATGCTCGACACCACCCTCTCCGATCCTACCACCTACTCTTTCACCAACCCCACCTTCACTTCCTCCACAATCTCTTATCCATCTTACACAGATTGGGATTCTAACTGTGCTCGTGGAAGGTTCTACGGAAGCTCCTATTCTCATCAGCTTCAACCCATCAACGGAAGCCCCTTGGGCATGTGGCGAATCCCCAACACCACTGCAGCCACTCACACCCACCAGAGTAACCCTATTTTACACCATCAATGCGCTTTGCCTTTGCTTTCTGACCAGGAAATGATGAGGGCGAAGATGGGTCCCTCCCCCTCTGGCTCGCAGCACCGGTTTGGTTATGACCTCAAACCCAGCGTAAACGACCATGTGAGTTTGGATCTTCATCTGTAA 702 0.5157 MNNTSTHDFMNVDSFSQLPFLRPSPSKDKDKSIRLFGQDFSHASKTTHSPSDNHHHHTINTQNSEPTRRFECHYCCRNFPTSQALGGHQNAHKRERQHAKRHLHSAMLDTTLSDPTTYSFTNPTFTSSTISYPSYTDWDSNCARGRFYGSSYSHQLQPINGSPLGMWRIPNTTAATHTHQSNPILHHQCALPLLSDQEMMRAKMGPSPSGSQHRFGYDLKPSVNDHVSLDLHL* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0050 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 97 IPR013087 -
Vra3g0050 233 PANTHER ZINC FINGER PROTEIN GIS 1 233 IPR044291 GO:0003700|GO:0009739|GO:0010026|GO:0010090
Vra3g0050 233 SUPERFAMILY beta-beta-alpha zinc fingers 67 98 IPR036236 -
Vra3g0050 233 MobiDBLite consensus disorder prediction 42 63 - -
Vra3g0050 233 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Vra3g0050 233 PANTHER ZINC FINGER PROTEIN GIS 1 233 - -
Vra3g0050 233 MobiDBLite consensus disorder prediction 48 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0050 Vra-Chr3 565482 566516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0050 6 233 C2H2 Transcription Factor Family AT2G41940 40.541 1.05e-41 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0050 - - pvu:PHAVU_001G144900g 376.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0050 3 565482 566516 Vra3g0050 3 565482 566516 ECH
Vra3g0050 3 565482 566516 Vra8g0217 8 2555839 2557026 PCT