Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0045 ATGTTGTGCTGCGGAGGTGCAGAGGAGGAGAGCAGCGGCCCCCCTGCAAGCCAATACACTGCACCACCTAGGGGTAGCACATACGGCGGCGGAGGAGGAAGTGGTAGAGGAGAGCCTAGGGGTGTTGCAAGGAGTGCCCCACAGAAAGTGTTGCCGATTGAGATACCCTCTATTCCATTGGAAGAGTTAAATAGGTTAACAGGAAACTTTGGCACAAAGGCTTTCATCGGCGAAGGTTCCTACGGACGGGTTTACTATGCAAAGTTGAGTGATGGTACTGATGCTGCTATTAAGAAGCTGGATAACAGTTCTTCCCCAGAACCTGACTCCGATTTTGGCACTCAGTTATCGGTTGTCTCAAGACTGAAGCATGACAACTTTGTTGAGTTGATTGGATATTGTCTAGAGGCAGAAAACAGAATTTTGGTATACCAACATGCAAGCCTTGGTTCTTTGCATGATGTGTTACATGGAAGGAAGGGTGTACAAGGGGCTGAACCTGGTCCAGTTCTAAGTTGGAACCAAAGAGCCAAAATTGCATTTGGTGCAGCAAAAGGACTCGAGTTTCTTCACGAAAAGGTTCAGCCTTCTATTGTTCATCGCGATGTTAGATCCAGCAATGTCTTACTGTTCAATGACTATGAGGCCAAGATAGCAGATTTTAGCTTGACAAATCAGTCTTCTGACACAGCCGCTCGGCTACATTCAACAAGAGTCTTGGGAACATTTGGCTATCATGCTCCGGAGTATGCCATGACTGGGCAGATAACCCAGAAAAGTGATGTTTACAGTTTTGGTGTTGTGCTATTAGAACTCTTGACTGGAAGAAAACCAGTAGATCACACAATGCCGAAAGGACAACAAAGTCTTGTAACTTGGGCAACTCCAAGGCTGAGCGAGGACAAAGTGAAACAATGTGTTGATCCTAAGCTAAACAACGAGTATCCGCCAAAGGCTATTGCCAAGTTGGCAGCAGTGGCAGCACTTTGTGTTCAGTATGAAGCTGATTTCAGACCAAACATGACGATTGTTGTGAAAGCTCTTCAGCCACTTCTCAATGCAAAACCACCTGGTCCTGAAACTCAAGCTTGA 1092 0.4625 MLCCGGAEEESSGPPASQYTAPPRGSTYGGGGGSGRGEPRGVARSAPQKVLPIEIPSIPLEELNRLTGNFGTKAFIGEGSYGRVYYAKLSDGTDAAIKKLDNSSSPEPDSDFGTQLSVVSRLKHDNFVELIGYCLEAENRILVYQHASLGSLHDVLHGRKGVQGAEPGPVLSWNQRAKIAFGAAKGLEFLHEKVQPSIVHRDVRSSNVLLFNDYEAKIADFSLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNEYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNAKPPGPETQA* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0045 363 PANTHER OS03G0226300 PROTEIN 1 362 - -
Vra3g0045 363 Gene3D Phosphorylase Kinase; domain 1 43 146 - -
Vra3g0045 363 PIRSF ILK 35 355 - -
Vra3g0045 363 ProSiteProfiles Protein kinase domain profile. 70 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0045 363 SMART tyrkin_6 70 348 IPR020635 GO:0004713|GO:0006468
Vra3g0045 363 SUPERFAMILY Protein kinase-like (PK-like) 47 348 IPR011009 -
Vra3g0045 363 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Vra3g0045 363 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 362 - -
Vra3g0045 363 Gene3D Transferase(Phosphotransferase) domain 1 148 357 - -
Vra3g0045 363 ProSitePatterns Tyrosine protein kinases specific active-site signature. 198 210 IPR008266 GO:0004672|GO:0006468
Vra3g0045 363 MobiDBLite consensus disorder prediction 1 48 - -
Vra3g0045 363 Pfam Protein tyrosine and serine/threonine kinase 74 348 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0045 Vra-Chr3 448767 451552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0045 1 349 Receptor kinase-like Gene Family AT4G02010 42.898 3.73e-86 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Vra3g0045 PK_Tyr_Ser-Thr 2.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0045 - - gmx:100786291 653.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0045 3 448767 451552 Vra3g0045 3 448767 451552 ECH
Vra3g0045 3 448767 451552 Vra8g0220 8 2644883 2648643 PCT