Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0044 ATGGCTCCTGGGAGCAGTGTTTTCAAAGAAGTTCTTGAATCTCATCTGATGTCTTCAGATTATGAAACAGGCAAGGCTAAATCTGAGGCCAAGAGTAATAGTACATCTACCAAATCTAGTGTTGGGTTGAATGGAAAGAACGGAGTTAGTCCAAATAATGGGGTGTACGAATTACTTGGATGCTCTGTTTGCAAGAAATTAATGTATCCTCCAATTCACCAGTGTCCAAATGGCCATACATTATGTTGCCATTGTAAAGTTGAAGTCCACAATATCTGCCCATCTTGCCATCATGAACTTGGAAATATAAGGTGTTTGGCTTTGGAGAAAGTGGCAGAATCGTTGGAACTTCCTTGCAGATATCAGAGTCTAGGTTGTCATGATATATTCCCTTACTATACTAAGCTCAAGCACGAGCAAAATTGTGGATTTCGTCCATACAACTGTCCTTATGCTGGATCTGAGTGCTCAGTGATGGGTGACATTCCAACTCTCGTTACCCATCTCAAGGATGATCACAAGGTTGACATGCATGATGGATGCACCTTCAATCACCGATATGTCAAAGCAAATCCTCATGAAGTTGAAAATGCGACATGGATGCTAACTGTTTTTAATAGTTTTGGAAGGCATTTCTGCTTGCACTTTGAGGCATTTCAGCTTGGCTCAGCTCCAGTGTATATGGCTTTTTTGCGATTTATGGGTGATGACTATGAAGCAAAGAAATTCAGCTACAGCTTAGAAGTTGGTGCAAATGGGCGCAAACTTATATGGCAAGGGATTCCAAGGAGCATTCGTGACAGTCATAGAAAAGTTCGAGATAGTCAAGATGGACTTATAATTCAGAGGAACCTGGCGCTTTATTTTTCTGGTGGAGAAAGACAGGAGTTGAAGTTGAGAATCAGTGGGCGTATATGGAGAGAAGATTGA 930 0.4129 MAPGSSVFKEVLESHLMSSDYETGKAKSEAKSNSTSTKSSVGLNGKNGVSPNNGVYELLGCSVCKKLMYPPIHQCPNGHTLCCHCKVEVHNICPSCHHELGNIRCLALEKVAESLELPCRYQSLGCHDIFPYYTKLKHEQNCGFRPYNCPYAGSECSVMGDIPTLVTHLKDDHKVDMHDGCTFNHRYVKANPHEVENATWMLTVFNSFGRHFCLHFEAFQLGSAPVYMAFLRFMGDDYEAKKFSYSLEVGANGRKLIWQGIPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRISGRIWRED* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0044 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 167 IPR013083 -
Vra3g0044 309 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT2-LIKE 1 308 - -
Vra3g0044 309 CDD RING-HC_SIAHs 61 96 - -
Vra3g0044 309 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 168 303 IPR008974 GO:0005515
Vra3g0044 309 MobiDBLite consensus disorder prediction 28 45 - -
Vra3g0044 309 Pfam Seven in absentia protein family 103 302 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vra3g0044 309 MobiDBLite consensus disorder prediction 22 45 - -
Vra3g0044 309 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 308 - -
Vra3g0044 309 ProSiteProfiles Zinc finger SIAH-type profile. 114 174 IPR013010 GO:0008270
Vra3g0044 309 SUPERFAMILY TRAF domain-like 114 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0044 Vra-Chr3 443195 447419 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0044 1 309 C3H Transcription Factor Family AT2G41980 77.994 0.0 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0044 K04506 - gmx:100813966 632.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0044 3 443195 447419 Vra3g0044 3 443195 447419 ECH