Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0038 ATGGAGTTGGCTTTGAGCTTAGGCCACACAAACAATGCTTCAATGGGGTTTTCCGTGGCACTGCCTCACCACACAAGAGCTTCCTCAGATCCACCCCTTCAGCTTCACCACCTTCTTCCTTCAACACCAGTTCTTCCTTCTCCACGCCTTCCTATTCCATGCCTCTCCCATGCATTAGGCATGGAAGACACACCGGTGAGGGCGCTTGATGACACGGAAGACGGTGCTGCACTTTCGTCCCCCAACAGCAGTGCAGTGTCGTCATTTCAGATGGAACTTTACAGAAACAGTAGAAAGTTTTTTGAGGGTGATAGCGAAGAAGACGAAAACGGGTCAACAAGGAAGAAACTCAGACTCTCCAAAACACAATCAGCTTTTCTAGAAGACAGCTTCAAAGAACACACCACTCTCAATCCCAAACAGAAACTCGTTCTTGCAAAAGAGTTAAATCTGCGTCCCCGTCAAGTGGAGGTTTGGTTTCAGAACAGAAGGGCAAGAACAAAGTTGAAGCAGACAGAGGTGGATTGTGAGTACTTGAAGAGGTGCTGTGAGAGTCTGTCAGAAGAGAATAAGAGGTTACAGAAGGAACTGCAAGAACTGAGGGCTTTCAAAACTTGTGAACCGTTTTTCATGCAACTTCCGGCTACCACCCTCACCATGTGTCCCTCCTGTGAACGCGTCGCCACCACCACCTCCGCCGCTGCTTCCGCCACCAACAATGATAGTGTTTATCTGAACAAGCCCAGAATATTGTCAGGCCCACATGACCCATTGGAGTGCTTCTTCTGA 789 0.4867 MELALSLGHTNNASMGFSVALPHHTRASSDPPLQLHHLLPSTPVLPSPRLPIPCLSHALGMEDTPVRALDDTEDGAALSSPNSSAVSSFQMELYRNSRKFFEGDSEEDENGSTRKKLRLSKTQSAFLEDSFKEHTTLNPKQKLVLAKELNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLSEENKRLQKELQELRAFKTCEPFFMQLPATTLTMCPSCERVATTTSAAASATNNDSVYLNKPRILSGPHDPLECFF* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0038 262 Gene3D - 118 168 - -
Vra3g0038 262 CDD homeodomain 114 171 IPR001356 GO:0003677
Vra3g0038 262 Pfam Homeodomain 114 168 IPR001356 GO:0003677
Vra3g0038 262 ProSitePatterns 'Homeobox' domain signature. 145 168 IPR017970 GO:0000981|GO:0006355
Vra3g0038 262 Pfam Homeobox associated leucine zipper 170 202 IPR003106 GO:0006355|GO:0043565
Vra3g0038 262 ProSiteProfiles 'Homeobox' domain profile. 110 170 IPR001356 GO:0003677
Vra3g0038 262 SMART HOX_1 112 174 IPR001356 GO:0003677
Vra3g0038 262 Coils Coil 176 203 - -
Vra3g0038 262 CDD bZIP 163 202 - -
Vra3g0038 262 SUPERFAMILY Homeodomain-like 111 179 IPR009057 -
Vra3g0038 262 SMART halz 170 213 IPR003106 GO:0006355|GO:0043565
Vra3g0038 262 PANTHER - 34 240 - -
Vra3g0038 262 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 34 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0038 Vra-Chr3 391169 394475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0038 104 227 Homeobox Transcription Factor Family AT4G37790 73.600 1.93e-63 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vra3g0038 Homeodomain 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0038 K09338 - gmx:100810885 345.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0038 3 391169 394475 Vra3g0038 3 391169 394475 ECH
Vra3g0038 3 391169 394475 Vra8g0223 8 2698414 2700679 PCT