Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0037 ATGGAGGAAGAGTCCTCCGATGCAATGAACCTTGATTTGAATCTGGGTCCGGGCCCAGAGCCTGAAACTGGCCCCATGAGCAATGAAGCTGTGAACTTGGATGAGTGGATAGGAGAGCCTCTTCAGAGAATCAGCGAAGCTGTGAGGTTTAGGGCACGACAACGGTGGCGATGGCGGCATCTTCCGCTACCGCATCCTGAACTTCATGTCCACATCCCACCTGAAGCTGCGCGGCATTTTCATATACCTCCTGAGGCTCACAATATCTCCATGGAATTGAACCAGTTTCTGGTCAATTCTGGAAATGGAACTGCCTTACAGGCTGGAGAAGGCAGTGTGGCGGCCGAAGAGAGAGTGGAGGAGGTGCCGAAGGCGTGTGAGAATGTGAATGGTGTTGCAGAGGACGAGGCTTCGCAGAAGAAGGATGATGTTGAAAAGGGTAGTGGCACTGATGGGGACTTTTTTGATTGTAACATCTGTTTGGACCTCTCTAGGGATCCTGTTGTGACTTGTTGTGGCCATTTGTTTTGTTGGCCTTGCCTGTATAGGTGGTTGCATCTGCATTCAGATGCGAGAGAGTGTCCAGTTTGCAAGGGAGAGGTGACTCTCAAAGGTGTTACCCCAATATATGGCCGAGGGAACAATGTCCGAGGTCACGATGAGGATTCTGCTCTTAAGATCCCTCCCAGGCCCCAAGCAAGGAGGGTTGAGAGTCTGAGACAAACCATTCAGAGAAATGCATTTACAGTCCCTGTGGAAGAGATGATTCGGCGTATCGGGAGTAGAATTGATCTTACTCGTGATTTTGTTCACCCACATGAAGGGGAGGGTGCCCGTGAAACTGCAGAGAGAACTACTTCCTTGCTAAGTAGGTTCTTGACTGCTCGAGGGATTCGGAGAGAGCAAAATTTAGGGCCACTCCCAGAGGATGTGATGGCTTTTGCTCAGAATAATGCTAATAATAATAATAATACTGCTGAGCCAGGGGATAACCGAAACAGGGTGCAACAATCCCATATGCTTCGAAGAACACAATCACACAGAGCAACGCTTTCTACTCTTTCAGCACTCACTTCTGCTGAAAGGTTACTGGAGGCTTATTTCCGTAGCAGTGCAATTGCTAGGAACCAAGAACAACCTTCACCTCCAGTTGATGACAGGGATTCTTTTTCAAGCATTGGCGCTGTTATAAATTCAGAGAGTCAAGTGGACACTGCTGTGGAGATTGATTCCATGGTATCCTTGTCAACATCCTCTTCTAGGAGGAGGAATGATGCTTCAAGATTGTCTGATGTGGATAGTGGAGATTCTCGTGCTCCAAGACGCAGACGTTTGAACTGA 1341 0.4847 MEEESSDAMNLDLNLGPGPEPETGPMSNEAVNLDEWIGEPLQRISEAVRFRARQRWRWRHLPLPHPELHVHIPPEAARHFHIPPEAHNISMELNQFLVNSGNGTALQAGEGSVAAEERVEEVPKACENVNGVAEDEASQKKDDVEKGSGTDGDFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHLHSDARECPVCKGEVTLKGVTPIYGRGNNVRGHDEDSALKIPPRPQARRVESLRQTIQRNAFTVPVEEMIRRIGSRIDLTRDFVHPHEGEGARETAERTTSLLSRFLTARGIRREQNLGPLPEDVMAFAQNNANNNNNTAEPGDNRNRVQQSHMLRRTQSHRATLSTLSALTSAERLLEAYFRSSAIARNQEQPSPPVDDRDSFSSIGAVINSESQVDTAVEIDSMVSLSTSSSRRRNDASRLSDVDSGDSRAPRRRRLN* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0037 446 Pfam Zinc finger, C3HC4 type (RING finger) 157 197 - -
Vra3g0037 446 SMART ring_2 157 197 IPR001841 -
Vra3g0037 446 ProSiteProfiles Zinc finger RING-type profile. 157 198 IPR001841 -
Vra3g0037 446 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 13 446 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vra3g0037 446 PANTHER OS01G0830200 PROTEIN 13 446 - -
Vra3g0037 446 MobiDBLite consensus disorder prediction 1 26 - -
Vra3g0037 446 MobiDBLite consensus disorder prediction 424 446 - -
Vra3g0037 446 ProSitePatterns Zinc finger RING-type signature. 172 181 IPR017907 -
Vra3g0037 446 SUPERFAMILY RING/U-box 152 210 - -
Vra3g0037 446 CDD RING-HC_AtRMA_like 155 199 - -
Vra3g0037 446 MobiDBLite consensus disorder prediction 413 446 - -
Vra3g0037 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 251 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0037 Vra-Chr3 370223 372537 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0037 1 437 C3H Transcription Factor Family AT3G58030 52.455 1.70e-136 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0037 K10666 - gmx:100811099 732.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0037 3 370223 372537 Vra3g0037 3 370223 372537 ECH