Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0036 ATGTCTTCTTTAACTCATTCCCTTCTCACCACAACCATTTTCTCAGTGCTCACAATCTTTCTTCATCCATCAAATGCTCAACTGAGTTCAACCTTCTACTCCACCACATGCCCTAACGTCTCTTCCATCGTGAGCAGTGTTATTCAGCAGGCTCTGCAATCTGATACTCGTATTGCTGCCAGCCTAACTCGTCTTCATTTTCATGATTGCTTTGTTAATGGATGTGATGGGTCTCTTTTGTTAGACCAAGGTGGGAACATAACACTGAGCGAGAAAAATGCAGGCCCCAACAATAATTCCGCTCGTGGCTTCAACGTAGTCGACAACATAAAGACATCTCTTGAAAATTCATGCCCTGGTGTTGTATCTTGTGCTGATATTCTTGCTCTTGCTGCTGAAGCTTCTGTGTCTTTGGGAGGAGGACCTTCATGGACCGTACTACTAGGCAGAAGGGACGGTTTGATTGCAAACCAATCTGGTGCTAACACTTCCATTCCTGCTCCAACTGAAAGCTTGGCCAATGTCACAGCAAAATTTGCTGCCGTTGGATTAAACATAACTGATCTCGTTGCATTATCTGGTGCACACACTTTTGGTCGTGCACAGTGCAGGTTTTTCAACCAGAGGCTGTTCAACTTCAGTGGCACGGGTAGCCCTGATCCCACGCTGAACTCAAGCTATTTAGCAACCCTGCAGCAAAACTGTCCACAAAATGGAAGCGGGAACACTCTGAACAACCTTGACCCTTCTTCCCCAGACACCTTCGACAACAACTACTTCCAAAATCTTCTCAACAATCAGGGTCTTCTTCAAACAGACCAAGAACTTTTTTCCACCAGTGGCTCCGCCACAATATCCATCGTCAACAACTTCGCCAACAACCAAACCGCCTTCTTCCAAGCCTTTGCTCAGTCCATGATTAACATGGGTAATATTAGCCCCTTAACAGGAAGCCAGGGAGAAATCAGATTAGATTGTAAGAAAGTCAATGGAAGCTAA 999 0.4525 MSSLTHSLLTTTIFSVLTIFLHPSNAQLSSTFYSTTCPNVSSIVSSVIQQALQSDTRIAASLTRLHFHDCFVNGCDGSLLLDQGGNITLSEKNAGPNNNSARGFNVVDNIKTSLENSCPGVVSCADILALAAEASVSLGGGPSWTVLLGRRDGLIANQSGANTSIPAPTESLANVTAKFAAVGLNITDLVALSGAHTFGRAQCRFFNQRLFNFSGTGSPDPTLNSSYLATLQQNCPQNGSGNTLNNLDPSSPDTFDNNYFQNLLNNQGLLQTDQELFSTSGSATISIVNNFANNQTAFFQAFAQSMINMGNISPLTGSQGEIRLDCKKVNGS* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0036 332 Gene3D Peroxidase, domain 2 166 309 - -
Vra3g0036 332 ProSiteProfiles Plant heme peroxidase family profile. 27 330 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra3g0036 332 ProSitePatterns Peroxidases proximal heme-ligand signature. 188 198 IPR019793 -
Vra3g0036 332 CDD secretory_peroxidase 27 329 IPR033905 GO:0004601|GO:0042744
Vra3g0036 332 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra3g0036 332 PRINTS Haem peroxidase superfamily signature 122 139 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra3g0036 332 PRINTS Haem peroxidase superfamily signature 140 152 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra3g0036 332 PRINTS Haem peroxidase superfamily signature 188 203 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra3g0036 332 PRINTS Haem peroxidase superfamily signature 248 263 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra3g0036 332 SUPERFAMILY Heme-dependent peroxidases 27 330 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vra3g0036 332 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra3g0036 332 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra3g0036 332 PRINTS Plant peroxidase signature 102 115 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra3g0036 332 PRINTS Plant peroxidase signature 121 131 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra3g0036 332 PRINTS Plant peroxidase signature 140 155 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra3g0036 332 PRINTS Plant peroxidase signature 187 199 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra3g0036 332 PRINTS Plant peroxidase signature 246 261 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra3g0036 332 PRINTS Plant peroxidase signature 262 279 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra3g0036 332 PRINTS Plant peroxidase signature 304 317 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra3g0036 332 Gene3D - 32 330 - -
Vra3g0036 332 PANTHER PEROXIDASE 6 331 - -
Vra3g0036 332 Pfam Peroxidase 45 294 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra3g0036 332 PANTHER PEROXIDASE 72-RELATED 6 331 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0036 Vra-Chr3 354008 355459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0036 8 332 Peroxidase AT5G06720 75.077 2.90e-178 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0036 K00430 - gmx:100810355 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0036 3 354008 355459 Vra3g0036 3 354008 355459 ECH
Vra3g0036 3 354008 355459 Vra8g0224 8 2730471 2732746 PCT