Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0028 ATGTTGCCTCCGTGGCTTTCAAGTATAGTTAATTCGTGCCTAAAGCCTTTTAAGTCTCAAGACAACGTGAATGATGATGATGATGAGCCTAGTACATCCCCGCTTCTATGGCGTAGAGATATTCAGATGCATGCTTGTGGTGAATTTTCCTTCGCTGCATGTCAGGCAAATCGGGAAATGGAAGATTATAGCCAAGTTGAGATTGGCTCTAAAGCATTATTCGTTGGGGTTTACGATGGTCACGGTGGTAATGATTGTTCCCGGTTTATTAAAACTCGTCTCTTCAACAACTTAGTAGAGGCTGTTAGGAATCAGGGAAGTATAAACGAAGACGCTCTGAGGGAAGCTTTTGCTACTACAGAGAATGATTTTATGTTAGTTGTTGAGAGGGGTTATGAGTTACAGAAGAAATTGGCAACAGCAGGTTCCTGTTGTCTGGTTGGTGTTATCTGGGGAGGAGTCCTATATATCGCCAATCTTGGAGACTCTCGTGCCATTGTTGGAACTTTAGGTAGATGTAGAAAGATCACTACTGAACAGTTGACAACAGAACACAATTGCATTAGGGAGGAAATTAGAGAAGAACTTAAGGCTTTGCATCCAAATGATCCAGATATTGTAGAAGTAAGACGAGGAGCATGGCGTGTTAAAGGCATCATCCAGGTGTCCAGAACCATAGGAGATGCGTATCTGAAGATTCCAAGGCATTTGCAGCCACCTCTCACTGTACCTGTGCTGTCTGCAGAACCAACTCTAAATACAAGAATTTTGACATCCGATGACAAATTTCTCATATTTGCATCCGATGGACTTTGGGAACACTTGACAAATCAGCAAGCAGCTGAGATTGTTCACTCGAATCCTCGAAGAGGGATTGCAAGAAGACTTATTAAGGCTGCTGTACAGTCGGCAGCTAATAGAGCGAGGATGGAATATACAGCGCTTCGGAACTTGCCGAGAGAGAGCAGACGGATTTATCATGATGACATTACTGTGGTTGTTGTCTTCCTCGACGGTCCCTCACGTTCCGATGTGGAACAGTTGTCCCTTAGAGCGTTCGAAGAGGAAGCTGGACCATCAAATTTTCAAAGTCTAAACGATTTGATGTGA 1110 0.4351 MLPPWLSSIVNSCLKPFKSQDNVNDDDDEPSTSPLLWRRDIQMHACGEFSFAACQANREMEDYSQVEIGSKALFVGVYDGHGGNDCSRFIKTRLFNNLVEAVRNQGSINEDALREAFATTENDFMLVVERGYELQKKLATAGSCCLVGVIWGGVLYIANLGDSRAIVGTLGRCRKITTEQLTTEHNCIREEIREELKALHPNDPDIVEVRRGAWRVKGIIQVSRTIGDAYLKIPRHLQPPLTVPVLSAEPTLNTRILTSDDKFLIFASDGLWEHLTNQQAAEIVHSNPRRGIARRLIKAAVQSAANRARMEYTALRNLPRESRRIYHDDITVVVVFLDGPSRSDVEQLSLRAFEEEAGPSNFQSLNDLM* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0028 369 PANTHER PROTEIN PHOSPHATASE 2C 68-RELATED 9 342 - -
Vra3g0028 369 SMART PP2C_4 42 335 IPR001932 -
Vra3g0028 369 Gene3D - 19 345 IPR036457 -
Vra3g0028 369 PANTHER ALPHABET, ISOFORM E-RELATED 9 342 - -
Vra3g0028 369 ProSitePatterns PPM-type phosphatase domain signature. 74 82 IPR000222 GO:0043169
Vra3g0028 369 Pfam Protein phosphatase 2C 70 304 IPR001932 -
Vra3g0028 369 CDD PP2Cc 55 337 IPR001932 -
Vra3g0028 369 ProSiteProfiles PPM-type phosphatase domain profile. 48 337 IPR001932 -
Vra3g0028 369 SUPERFAMILY PP2C-like 42 340 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0028 Vra-Chr3 273608 275752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0028 5 362 PP2C-type Phosphatase Gene Family AT5G06750 49.091 1.87e-127 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0028 K01102 - gmx:100806476 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0028 3 273608 275752 Vra8g0232 8 2849206 2853260 PCT