Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0026 ATGGGAATAGAGCGCGTGCAGTGTGACTATGTCTCTCTGGACGAAACCTTCGAAATTGGAAAAGAGAAGTATCACGGTCAACAGTACTGCCATATTTACTTCGCACGTCTTCATTTGTTGCGGACTCTCTTGTATTCACTCGCTCCTCACTGGAAACCTAATTTTCCCGTCTGCACGGTGTTGGAATTGGAAGAGGGCAAGGAGTGTGTCATTGTTGGAACCCTCTACAAACACATGAAGCTCAAACCTCGCGTACTTGATGAGTATTCTAAGCAGAAATCAGTGGTTCCACTTGTCAAGCCACATAACTTCATGCACTCGGATGATTACCTAGTTTTGGAAGATGAAAGTGGGCGGGTTAAGCTCAACGGAAATATCATTCCGCCTGAATATGTAACAGGAATTGTGGTCGCTGTACTTGGAAAGGAAAGTGGGGCAGGTGACTTTTTGGTTCAGGATGTACTAGATGCTGGCTTACCCCCACAGATAGAATTCCCCCTTAAATCAGGGGAAGACAAATACGTTGTTCTTGTGTCAGGTTTAAGTGTTGGTAGCAGCACCTCTAATCCTCTTCAGTTTCAGCTTCTCATTGATCATATTACGGGGCATTTAGGGGATGAGAAGGCACAACGTTTTGCATCAAAAATTGTTCAAGTTGTCTTTGCTGGAAATTTAGTTGAGATACCTCACAGAATTCTTAACGGACAGAATTTGGCTTCAGAGGATTTTGCAAGAATGTCTGAGCCAATAAGGGAGCTAGACATTCTGTTGAGTCAGATAGCGGCTGGTTTGCCTTTGGATATTATGCCAGGACCCAGTGATCCTGCAAATTTCTCATTGCCACAACAGTCATTGCATGGATGCCTTTTCCCTGGGTCATCGACATATAATACTTTCAGATCCTGTACAAATCCTCATTGTTTTGAGCTTGATAATGTCAGGTTTCTTGGGACATCCGGTCAAAATGTAGATGATCTTGACAAATATTCAGATGCAAAAGATAAACTTGAATTCATGGAAAGGACATTAAGATGGAGGCATTTAGCACCCACAGCACCCAATACTCTTGGGTGCTTTCCTTTTACTGAGAGGGATCCTTTCTTCATTGAGAGTTGTCCTCACGTTTACTTTGTTGGAAATCAAGATAAATTTGAAACTCGTATCATAAAGGGATCAGAAGGGCAGTTGGTGAGACTCATATGCGTTCCTAAATTCAGTGAAACTGGAGTTGCTGTTATGCTCAATCTAAAGGACCTCGAATGTCATGCTCTCAGTTTTACCCTTGATCTATAA 1293 0.4254 MGIERVQCDYVSLDETFEIGKEKYHGQQYCHIYFARLHLLRTLLYSLAPHWKPNFPVCTVLELEEGKECVIVGTLYKHMKLKPRVLDEYSKQKSVVPLVKPHNFMHSDDYLVLEDESGRVKLNGNIIPPEYVTGIVVAVLGKESGAGDFLVQDVLDAGLPPQIEFPLKSGEDKYVVLVSGLSVGSSTSNPLQFQLLIDHITGHLGDEKAQRFASKIVQVVFAGNLVEIPHRILNGQNLASEDFARMSEPIRELDILLSQIAAGLPLDIMPGPSDPANFSLPQQSLHGCLFPGSSTYNTFRSCTNPHCFELDNVRFLGTSGQNVDDLDKYSDAKDKLEFMERTLRWRHLAPTAPNTLGCFPFTERDPFFIESCPHVYFVGNQDKFETRIIKGSEGQLVRLICVPKFSETGVAVMLNLKDLECHALSFTLDL* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0026 430 Gene3D - 166 429 - -
Vra3g0026 430 Gene3D - 34 157 - -
Vra3g0026 430 Pfam DNA polymerase delta subunit OB-fold domain 28 154 IPR040663 -
Vra3g0026 430 CDD MPP_PolD2_C 174 426 IPR041863 -
Vra3g0026 430 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 4 426 IPR024826 -
Vra3g0026 430 Pfam DNA polymerase alpha/epsilon subunit B 175 385 IPR007185 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0026 Vra-Chr3 258309 264383 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0026 4 430 Core DNA Replication Machinery Family AT2G42120 72.664 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0026 K02328 - gmx:100780072 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0026 3 258309 264383 Vra3g0026 3 258309 264383 ECH