Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0020 ATGGATACTCGAAAGAGGGGAAGGCTCGAACTCGGTTTCAACTCCAATGGTGGATTTAAGAAATCCAAGCAAGAAATGGAGTCCTTATCAACTGGTGTAGGAAGCAAATCAAAGCCTTGTACCAAGTTTTTCAGCACTTCTGGTTGTCCGTTTGGTGAGGGATGCCACTTCCTGCATTACGTTCCTGGTGGCTATAATGCTGTTGCCCATATAATGAATCTAACACCTGCAGCACCTCCAGCATCAAGAAATGTGGCAGCTCTGCCACCTGTACCAAATGGGTCTGCACCACCTGCTGTAAAGACCCGCATATGCAACAAATTTAATACTGCTGAAGGTTGCAAATTTGGTGACAAATGCCACTTTGCCCATGGTGAATGGGAACTTGGGAAGCAAATTGCTCCATCATTTGATGACCATCGAGCGTTGGGACCGACTGCAGCAGGTCGTTTTGGTGGTCGAATGGAGCCTTCTCCTGGTCCTGCTACAAGTTTTGGTTCCCATGCCACTGCCAAGATAAGCGTAGAAGCATCCCTGGCTGGTGCAATCATTGGGAAGGGTGGTGTGAACTCAAAACAGATATGCCGCCAAACTGGAGCCAAACTTTCGATCAGGGAGCATGAATCGGATCCTAATATTAGAAACATTGAACTAGAGGGAAATTTTGAGCAAATCAAGGAAGCTAGTAATATGGTGAAGGATTTGCTACTGACCCTGCAAATGTCTGCATCAAAAGCTAACTCAGGTGTTCCTGGTGCACCTATTCGAGAGCACGGAAGCAATTTTAAGACGAAGCTGTGCGAGAATTTNTCCAAAGGGTCTTGCACATTTGGAGAGAGATGCCACTTTGCTCATGGAGCTTCCGAATTGCGTAAATCAGTATGA 885 0.4621 MDTRKRGRLELGFNSNGGFKKSKQEMESLSTGVGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGYNAVAHIMNLTPAAPPASRNVAALPPVPNGSAPPAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKQIAPSFDDHRALGPTAAGRFGGRMEPSPGPATSFGSHATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNIRNIELEGNFEQIKEASNMVKDLLLTLQMSASKANSGVPGAPIREHGSNFKTKLCENXSKGSCTFGERCHFAHGASELRKSV* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0020 294 ProSiteProfiles Type-1 KH domain profile. 168 232 - -
Vra3g0020 294 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Vra3g0020 294 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Vra3g0020 294 SMART kh_6 167 237 IPR004087 GO:0003676
Vra3g0020 294 ProSiteProfiles Zinc finger C3H1-type profile. 261 288 IPR000571 GO:0046872
Vra3g0020 294 Pfam KH domain 171 233 IPR004088 GO:0003723
Vra3g0020 294 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 126 IPR000571 GO:0046872
Vra3g0020 294 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 286 IPR000571 GO:0046872
Vra3g0020 294 Gene3D - 260 293 - -
Vra3g0020 294 Gene3D - 94 131 - -
Vra3g0020 294 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 9 293 - -
Vra3g0020 294 ProSiteProfiles Zinc finger C3H1-type profile. 99 127 IPR000571 GO:0046872
Vra3g0020 294 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 158 240 IPR036612 GO:0003723
Vra3g0020 294 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Vra3g0020 294 MobiDBLite consensus disorder prediction 144 166 - -
Vra3g0020 294 MobiDBLite consensus disorder prediction 1 26 - -
Vra3g0020 294 SUPERFAMILY CCCH zinc finger 98 130 IPR036855 GO:0046872
Vra3g0020 294 Gene3D K Homology domain, type 1 164 259 IPR036612 GO:0003723
Vra3g0020 294 CDD KH-I 170 233 - -
Vra3g0020 294 SUPERFAMILY CCCH zinc finger 260 291 IPR036855 GO:0046872
Vra3g0020 294 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Vra3g0020 294 SMART c3hfinal6 99 126 IPR000571 GO:0046872
Vra3g0020 294 SMART c3hfinal6 261 287 IPR000571 GO:0046872
Vra3g0020 294 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 9 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0020 Vra-Chr3 207579 210395 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vra3g0020 KH_1 1.2e-11 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0020 - - gmx:100803981 543.888