Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0019 ATGATCAACGTGAAACGCGAACTGGACGGTGACGGTGATTGCAGTAGTATCGACAAGCGTGACTCTGAACTTCGTGCCGTAAGCGACGACGCTGATTACCAAACTCCGAAACGCTGTCGAGGTATCCGTTCTCGGTATCTGGCCTTCAAGAACATGATTCATGATGAAAGGGAAGAAATTGCTAGGCCTGACTCTAACAAGTTCGATTTGATCTTTAGTGAAATGGAGAGCTTACATCAGCAAGTTACAAAACCAAGAGAACAAGTAGCTGACGCAAAGGCTCTTTTGGAAATCACCCAATCCCTGGTAATGTCTGTGAGAAGTACAGCGAATGGTGGACTAACTCCTTCAGACTTTGTTACAAACATTCTTAAAAAGTTCGGAGGACATGTTGGACCAAGTAATAGCGCAGAAGATTGCAGTAGAAATTCAGTAGCTTGGAATGATATTGGTGTTGCGGTGTCACGTGTTTTTAGAGCGGGTTATGGGTGCTGTACAATGATGGCCCCAATGGATGCTAAAATAGAGCAGAAGGTCATTATTCGTCGAAAGCGTGTGAGACCCACTGAATTGGCACGGCCTGAAGAGCTATGTGGAGGTTCGGGGGAAGAGATAGCGGAGACCGATAAGCATATGTTAACGATGTTTAACATCTTAAGGATGAATAAAGTTGTCAAGCTTGAAAATCTGGTTTTGAATCGGAACTCATTTGGACAAACCGTGGAGAATTTATTTGCTTTATCCTTTTTAGTCCGAGATGGTCGGGCTGAAATAAAAGTTAACGAGTCTGGATGGCAACTAGTTTCGCCTAGGAACGCTCCTGCTGCAAATTCAGTTGTTTCTGGGGATGTTGCTTTCAGCCATTTTGTTTTCCGATTTGACTTCAACGATTGGAAGTTGATGGTTCGCACTGTTAGGGTTGGAGAGGAGCTGATGCCTCATAGGAAGGAACAGTGA 957 0.4431 MINVKRELDGDGDCSSIDKRDSELRAVSDDADYQTPKRCRGIRSRYLAFKNMIHDEREEIARPDSNKFDLIFSEMESLHQQVTKPREQVADAKALLEITQSLVMSVRSTANGGLTPSDFVTNILKKFGGHVGPSNSAEDCSRNSVAWNDIGVAVSRVFRAGYGCCTMMAPMDAKIEQKVIIRRKRVRPTELARPEELCGGSGEEIAETDKHMLTMFNILRMNKVVKLENLVLNRNSFGQTVENLFALSFLVRDGRAEIKVNESGWQLVSPRNAPAANSVVSGDVAFSHFVFRFDFNDWKLMVRTVRVGEELMPHRKEQ* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0019 318 PANTHER UNCHARACTERIZED 1 317 IPR027786 GO:0005634|GO:0006281|GO:0030915
Vra3g0019 318 Pfam Nse4 C-terminal 225 312 IPR014854 -
Vra3g0019 318 PANTHER NON-STRUCTURAL MAINTENANCE OF CHROMOSOMES ELEMENT 4 1 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0019 Vra-Chr3 198159 201380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0019 40 316 Non-SMC Element family AT1G51130 50.538 1.34e-93 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0019 K22825 - gmx:100781485 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0019 3 198159 201380 Vra3g0019 3 198159 201380 ECH