Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0016 ATGAACGACAACAAGGTTCATTGGGGAGGATTGATTCAACAAAGTCATGGACTAAGTGGGGATTTTAATTCTGAGTTTGGTAATCATTACTGTCAATATTTTGATATCAGACAACCCTGGAATATGGGACCACTTGCGATGGTTGGAAGAGAAGCCACAGATCAGTTCCCAAACATTGGCCATGTCAAATCATCTGGCACCATTATCAGCCGTTTTGAGTCACCAGCTTCTGCCTTTTATGCTGCAGAAAACTGCATGGGATTTTCAGAATATGATTGCCAACTTGGTGTTCAATCTCAGTTATGCAAGATTAATGACTTGGAATTCCCTTTGTATCAATCTCCCAGGGAAAACCTTATCTTGGACACAGCAAACCAACCTGACTCAAGCTATGATTTTTCAAACACTTTGCAGTCCATAGTGAAATCTCAATTCAATAATAATCAATGTCGTGTATCCCCTGAAAAGTCCAATAAAATTTCATGTGGGAATTTTCCCACCACCAAGTTCCTTCCAATTGAACAACAAAAGTTGTTCATTGATGGTGTCATCAGGGGTTCCTCATTTCCCAACAATGGAATTCAGGATCGCACGGTTGCTCGTGGATCTTTTGATTTACCTGTTGCACATATGAGATTTTCTTCTCAGATCGAGAAGTTGTCTCCAACACTTTCAGCAGGAAGTGTGTCTACTGTTGGAAACTCTGCTTCTAATGGGGCAGCAGTCTCAAGCAAAACACGTATAAGATGGACTAAGGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGAGGCTCTGAGCAGGCAACACCAAAAGCTATATTAAAGATGATGGACACAGATGGCTTGACTATCTTCCATGTCAAAAGTCATCTGCAGAAATATAGAATTGCAAAATTCATTCCAGAGCCTAGTCAAGGGAAATCTGACAAAAGAACCCACATAAAAAATGTGCATCATCTTGATGTCAAAACAGGCTTACAAATTAGAGAGGCACTTAAGCTTCAATTAGATGCCCAAAGGTGTCTTCACGAACAACTAGAGGTTCAGAGAAAATTGCAGCTGAGAATTGAGGAACAAGGAAGGCAACTAAAAAAAATGTTTGACCAGCAGCAAAAGACAAGTAATAACCTCTCAAATACTCAAGATTCAGGCACTGATGAGACAACAATTACTCATAAAGATGGTGAAGTTTCTGCTTCTGAAGGAGCCAACAATTCCTTCTTCACTTCCCAAGCCTCTCCAAGCCAATAA 1260 0.4032 MNDNKVHWGGLIQQSHGLSGDFNSEFGNHYCQYFDIRQPWNMGPLAMVGREATDQFPNIGHVKSSGTIISRFESPASAFYAAENCMGFSEYDCQLGVQSQLCKINDLEFPLYQSPRENLILDTANQPDSSYDFSNTLQSIVKSQFNNNQCRVSPEKSNKISCGNFPTTKFLPIEQQKLFIDGVIRGSSFPNNGIQDRTVARGSFDLPVAHMRFSSQIEKLSPTLSAGSVSTVGNSASNGAAVSSKTRIRWTKDLHEKFVECVNRLGGSEQATPKAILKMMDTDGLTIFHVKSHLQKYRIAKFIPEPSQGKSDKRTHIKNVHHLDVKTGLQIREALKLQLDAQRCLHEQLEVQRKLQLRIEEQGRQLKKMFDQQQKTSNNLSNTQDSGTDETTITHKDGEVSASEGANNSFFTSQASPSQ* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0016 419 MobiDBLite consensus disorder prediction 401 419 - -
Vra3g0016 419 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 244 302 IPR017930 -
Vra3g0016 419 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 42 419 - -
Vra3g0016 419 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 245 300 IPR006447 GO:0003677
Vra3g0016 419 MobiDBLite consensus disorder prediction 369 389 - -
Vra3g0016 419 Gene3D - 244 303 - -
Vra3g0016 419 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 42 419 IPR044848 GO:0003700
Vra3g0016 419 Pfam MYB-CC type transfactor, LHEQLE motif 329 376 IPR025756 -
Vra3g0016 419 Pfam Myb-like DNA-binding domain 249 298 IPR001005 -
Vra3g0016 419 Coils Coil 332 352 - -
Vra3g0016 419 MobiDBLite consensus disorder prediction 368 419 - -
Vra3g0016 419 SUPERFAMILY Homeodomain-like 243 299 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0016 Vra-Chr3 176337 179351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0016 229 373 G2-like Transcription Factor Family AT4G28610 57.143 2.40e-51 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra3g0016 Myb_DNA-binding 1.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0016 - - gmx:100527257 663.299