Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0013 ATGTTCTCCTTTCGAAAACTCCACGCTCAGTGCTCCTTCTTCCTTCTTAAACCCTGCCAAAACCCTAGACTTCAGAGCACGAAATCCGCTACCAAATTCGCCGGAAAAGCCACCATAAAAGAAGCCCAAGCCGCATTGCTCGAGTACCTCCACTCCACGCGCAGCCTTAACTTCTTAGACGCCGACAACATGTGCAGAAACTCGCCCTCCTTCATCCAGGACCTCCTCGCCAAAACCCACTCGCACACGCCGCACGTGAATACCAAGCGCTGCATCTCGCGCTACCTCCGCTACCACCCCATCAACGAGTTCGAGCCCTTCTTCGAGAGCGCGGGTCTCTCCCCTTCCGAGTACGCCCCCCTTCTCCCGCCTCATATGATTTACCTAAACGACGACGTTCTGCTCATGGAGAATCACCAGGCTCTCTGCAACTTCGGGGTACCCCGCACCAAGATGGGGAGGGTTTTCAAACTCGTACCTCAGGTTTTTCGGTATAAACCCGGGATCTTGATCTCGAAGCTTCAGGAGTACGAAAAGCTCGGTGTTTCTCGGAAGACTTTGATCAATGTGGTTGCTTCCAACCCCTGCATTTTGGTTGGGGGTGTTGATTTTGATTTTGTTAAGGTTGTGGAGATGTTGAAGAGTGTTATTGGAAAGGATTGTGATTGGATTGGTGAGCATTTGTTGATTAACAAGGGTTGTTGTAATTGGAGGTTGGTGTTTCATGTTTTGACTTTGCTTTCTAGGGATTTCAATGAAAAACAATTCGGTGGTTTAATCACTCGTAGTCCAGGATTGATTTTTGAGGAATCTGGAGGTCGTGTGTTATTCTTGATTGGCTTTTTGTTGAAATTTGGATTGTGTGTAAACCGGGTTTGTATCATGCTGCAGGAGTTTCCGGAGATTCGGGTTGGGAAATTTTTGTCGAATTTGAGGTTGTGTTTTCTGTTCTTGACAGAGATTGAGATGGAGGCTTCGGAGATTGGGAGGATTTTGCAGTCTCACTGCTTGGTGTTGGGTTCCTTCACCATAAAGAGAACGATTACTTTACTCACTAACTTGAATGTTGGAAAGAAGCGACTGTGTAGAGTTGTGAAGGATGACCCTCTAATAATGAAGCGCTGGGCTTTGGGAAGGAGGATTGAGCCTCTGGTTAACTCGTATTTGGAGTTTGAATCCAGGGCGCTGAAGAAGGAGTTCATGCTGAGCTTGGGTTATGAAGAGAACTCCAAAGCAATGAATGAGTCGATTAAGTTGTTCAGGGGTAGGGGAGCTGAGCTCCAGGAGAGACTTGAGTTTATTGTTAATGCTGGGTTGGATTATGAGGTTGTCTGTAAGATGATTCGAGAGTCCCCGCGGATTCTTAGTCAGACCACTGATAGGATCAACATGAAAATTGAGTCTCTTGTGAATGAAGGATATGCAATGTCGGATTTGGCTAGTTTTCCTTCCTTCCTTTCCTATTCGGCTAAAAGGGTTAAGCTGAGGTTTTCAATGTATAATTGGCTAAAAACGCATGGAGCTGCAGAAGCAGGGCTTGCTTTGAGCACTATAATTGCATGCTCTGATAAAGCGTTTGAGAAGATGTACGTGAATCGCCATCCCTCTGGCCTTCAAGTTTGGCGGGATTTAAAGGCACAGATTTCTTCTATGGCTTAG 1659 0.4641 MFSFRKLHAQCSFFLLKPCQNPRLQSTKSATKFAGKATIKEAQAALLEYLHSTRSLNFLDADNMCRNSPSFIQDLLAKTHSHTPHVNTKRCISRYLRYHPINEFEPFFESAGLSPSEYAPLLPPHMIYLNDDVLLMENHQALCNFGVPRTKMGRVFKLVPQVFRYKPGILISKLQEYEKLGVSRKTLINVVASNPCILVGGVDFDFVKVVEMLKSVIGKDCDWIGEHLLINKGCCNWRLVFHVLTLLSRDFNEKQFGGLITRSPGLIFEESGGRVLFLIGFLLKFGLCVNRVCIMLQEFPEIRVGKFLSNLRLCFLFLTEIEMEASEIGRILQSHCLVLGSFTIKRTITLLTNLNVGKKRLCRVVKDDPLIMKRWALGRRIEPLVNSYLEFESRALKKEFMLSLGYEENSKAMNESIKLFRGRGAELQERLEFIVNAGLDYEVVCKMIRESPRILSQTTDRINMKIESLVNEGYAMSDLASFPSFLSYSAKRVKLRFSMYNWLKTHGAAEAGLALSTIIACSDKAFEKMYVNRHPSGLQVWRDLKAQISSMA* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0013 552 Pfam mTERF 425 527 IPR003690 GO:0003690|GO:0006355
Vra3g0013 552 Pfam mTERF 247 390 IPR003690 GO:0003690|GO:0006355
Vra3g0013 552 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 24 545 - -
Vra3g0013 552 SMART mt_12 153 183 IPR003690 GO:0003690|GO:0006355
Vra3g0013 552 SMART mt_12 188 220 IPR003690 GO:0003690|GO:0006355
Vra3g0013 552 SMART mt_12 445 475 IPR003690 GO:0003690|GO:0006355
Vra3g0013 552 SMART mt_12 476 509 IPR003690 GO:0003690|GO:0006355
Vra3g0013 552 Gene3D Transcription termination factor 3, mitochondrial 100 270 IPR038538 -
Vra3g0013 552 Gene3D Transcription termination factor 3, mitochondrial 275 544 IPR038538 -
Vra3g0013 552 PANTHER CGI-12 PROTEIN-RELATED 24 545 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0013 Vra-Chr3 148132 151133 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vra3g0013 mTERF 1.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0013 - - gmx:100807690 810.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0013 3 148132 151133 Vra3g0013 3 148132 151133 ECH