Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0011 ATGGGTTCAGACGCTGCTGCCACCAAACTCTCCTCTTCTGAGTCCCTCAACGGTTTGAAATTCGGCCAAAAAATCTATTTTGAGGATGTGGGTCTGGCTACTCCAGCCACTTCTCTTACTTCTGCTGCTGCTGCTGCTGGTGGTGGTGGTGGTGGTGTTACTTCTTCTTCCTCTTCCTCTTCCTCTTCTTCAAGGAAAGGAAGAGGTGGGTCTGTTCAACCAGCTCAGCCTCCAAGGTGTCAAGTTGAAGGGTGTATGGTAGATCTGAGTGATGCTAAAGCTTACTATTCTAGGCACAAGGTCTGTGGCATGCACTCTAAATCCCCTACAGTCATTGTTGCCGGCCTTCAACAAAGGTTTTGTCAACAGTGTAGCAGATTTCACCAGCTTCCTGAGTTTGATCAAGGAAAAAGAAGTTGCCGCAGGCGACTGGCTGGCCATAATGAACGTCGGAGAAAGCCCCCACCCAGCTCTCTCTTAACCTCTCGCTATGCCAGGCTTTCTTCATCTGCTTTTGATAATAGTGGCAGAGGGGGCAACTTTCTGATGGAATTGGCTTCATATCCTAAGCTTAGTCTGAGAAATTCACTTCCAACTCCTAGATCATCCGAGCTAGGTCCTGGAAGTCAAACCTCCACACTTAGCTGGCACGGCAACTCAGAGACACCAGCTGACATTTTCTTGCAGGGTTCGGTTGGTGGGACAAGCTTTGCCGGTCCCGGTCATCCTCCAGGGGAAAGTTACACAGGTGTCACTGACTCGAGCTGTGCTCTCTCTCTTCTGTCAAGTCAAACATGGGGTTCTAGAAACACAGCACCAAGTCTTGGGTTGAATAATATGATAAATTTCAACGGGACACCCATGACACAACTTACTGCTTCATCTCATGGTGCATCACTCCATGAACTTCCAAATACCTCGTGGTGTTTCAAGGGCATTGATTCTGGTAACTGTTCGCCTGAGGTTGTCCCTGATCTAGGTCTGGGTCATATTTCACAGCCTCTGAATGGCCAGCTCCATGGTGAATTAGATCTGTCTCAACAGGGCAGGAGGCATTATATGGATTTAGAACAGTCCAGGGAATATGAATCTGCTCATTGGTCACTTTAA 1110 0.4811 MGSDAAATKLSSSESLNGLKFGQKIYFEDVGLATPATSLTSAAAAAGGGGGGVTSSSSSSSSSSRKGRGGSVQPAQPPRCQVEGCMVDLSDAKAYYSRHKVCGMHSKSPTVIVAGLQQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPSSLLTSRYARLSSSAFDNSGRGGNFLMELASYPKLSLRNSLPTPRSSELGPGSQTSTLSWHGNSETPADIFLQGSVGGTSFAGPGHPPGESYTGVTDSSCALSLLSSQTWGSRNTAPSLGLNNMINFNGTPMTQLTASSHGASLHELPNTSWCFKGIDSGNCSPEVVPDLGLGHISQPLNGQLHGELDLSQQGRRHYMDLEQSREYESAHWSL* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0011 369 MobiDBLite consensus disorder prediction 197 218 - -
Vra3g0011 369 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 3 369 IPR044817 GO:0003677
Vra3g0011 369 MobiDBLite consensus disorder prediction 51 70 - -
Vra3g0011 369 Pfam SBP domain 80 153 IPR004333 GO:0003677
Vra3g0011 369 Gene3D - 70 141 IPR036893 GO:0003677|GO:0005634
Vra3g0011 369 SUPERFAMILY SBT domain 78 159 IPR036893 GO:0003677|GO:0005634
Vra3g0011 369 MobiDBLite consensus disorder prediction 42 78 - -
Vra3g0011 369 ProSiteProfiles Zinc finger SBP-type profile. 77 154 IPR004333 GO:0003677
Vra3g0011 369 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 3 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0011 Vra-Chr3 124690 129115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0011 19 369 SBP-box Gene Family AT2G42200 44.591 8.57e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vra3g0011 SBP 1.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0011 - - gmx:100780949 627.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0011 3 124690 129115 Vra8g0246 8 3098517 3102236 PCT