Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0009 ATGATTCGCCACTTTCTCTCTGTGCATCTTAATCTCTTTGTATTCTCAATTTTGATTTCTCAGATCTTGGCGTTCACGCATCCAAGCGAAGTGTCAGCTCTGCAGGATCTATACAGGACCTTTAACTACCCACCTGTGCTCAACGGATGGAATGGTAGCGATCCTTGTGGAGAGTCTTGGACAGGAATTGCTTGTTCTGGACCATCAGTTATACAGCTAAAACTTCAAGGATTAAACCTCACAGGGTACATTGGAAGTCTGCTATATAATCTACCTAACTTGAAGCAACTTGATGTCAGTTCAAATAACATAGAGGGCGAAATTCCATTCGGTTTACCCCCCAATATCACATATATGAATTTAAGCCACAATTTACTACATGGACCAATTGGTGATGTATTTAGTGCTTTAAATAATCTCAAAGAAATGGACCTTTCATACAATAATTTCTCAGGAGATCTACCATATTCATTTGGTTCCTTAAGAAACCTTGCCAGATTGTTCCTGCAGAATAACAGATTCACTGGATCAGTCACCTACTTGGCTGAACTTCCTCTAACAGATTTGAACATTCAAGATAATCTGTTTAGTGGCATTCTTCCGCAGCATTTTCAATCCATACTGAATTTATGGATTGGAGACAATAAATTCCATGTGGCCGATAACTCTCCTCCTTGGACTTTTCCGCCAGATACCATGTCAATTGAGCAGAACACTAGTATCCCACCCACGACTCAGGCAAATGTCACCCAGAATTATTCTCGTCCCAGTGAGGCTCCTCCCAGAGTAAATGAGACTCATCCCAGGGTAAATGAGACTCATACCAGAGTAAGAGAGGCTCCTCCCAGAGTACATGATGCTCATCCCAATGTAAATGAGGCTCATCCCAAGGTAAATGAGGCTTCTCCCGGATTACGTGAGGCTCGTCCTAGAGTAAATGGTGATCATCCCAAGGTAAATGAGGTTCATCCCAGAGTACATGAGGCTCCTCCCAGAGTACATGAGGCTCATCCGAAGGTAAATGAGGCTCCTTCCGGAGTAAGCGAGGCTCCTCCTGGAGTAAGCGAGGCTCCTCCTGGAGTAAATGAAGCTCATCCGAGGGTAAATGAGGCTCCTGTCAAAGTAATCAAGCACAAGAAAAATAATGTAGGTCCAGGAGGAATAGCATTTATGATTGGTGGAGGAACACTAATGGCCACAGGGGTGGCTCTCTTTGTTGCAATCCTTTTGAATAAACTTCGTCTAGAGAGCCCGAACTTGAAGAGCTCAGAAAGCAGCCATGGCTCATTTCCTTCTCATCCGACCAGTGCTACCATAGGTTTTTCTAAAAGTGACAGATACTCTGGAAGAACGAAAATTTACACGGTAGCAGAGCTTGAGTTAGCTACTAATTGCTTCAGTGAAGCCAACATCCTAGGAGAGGGATCTCTTGGCCCTGTTTATAGAGCTAAATTTCCGGATGACAAAATTTTGGCCGTGAAGGAGATAAACATCGCGCAAATGTCTTTGAAAGAAGAGGAAAAGCTCTTGGATGTCATTTGCACGGTTTCCCGACTGAAGCACCCCAACATCGTAGCACTCAAAGGTTACTGTTTGGATAAAGGAAAGGGTCTACTTGTTTACGATTATGTTGGAAATGTCACTCTAAACGATGCCCTTCACAGCGAGGCATGCGAACCTGTGTCATGGGTTCACCGTCTCCGGATTGCTCTAGGTGTTGCTCAGGCTCTAGACTATTTGCACTCAGCGTTCTGCCGTCCCGTGGCCCACGGCAATTTGAAGGCTGCCAATGTTCTACTGGATGAAAATTTGATGCCTCGAGTTTGTGACTGTAGCTTGGTTATTTTGCGAACACTGACTATCAGTCAAGTTGAAAAACCGGCTAATGAGATTGATATTGAAGAGATGGGCTACCATGCGCCTGATCATGGCCAACAAGGAACCGGCAGCAGAAAGAGAGACGTTTTTGCCTTCGGGGTGTTGCTGCTGGAACTGTTAACAGGAAAGAAACCTTTTGATAGAGCCAGGCCGGTGGATGAGCAATATCTGGTGAAATGGGCTCCGCCCATGCTTCCTTATAGAGCGAGTTTGGAACAGTTGGTGGATCCCCGCATGAAAAGAACATTTTCGTCCAAGGCTCTTTCTCGTTATGCTGATATCATCTCCCTCTGTATACAGCCTGCAAGGCAACTCCGTCCTGCAATGAGTGAAGTTATGGAGTCTCTTGAATCTTTATACCAAATGTTCGACATTGAAAAGAGCGATGTAGCAGATGGTACTGAACTCGATCCAGTTTAG 2298 0.4469 MIRHFLSVHLNLFVFSILISQILAFTHPSEVSALQDLYRTFNYPPVLNGWNGSDPCGESWTGIACSGPSVIQLKLQGLNLTGYIGSLLYNLPNLKQLDVSSNNIEGEIPFGLPPNITYMNLSHNLLHGPIGDVFSALNNLKEMDLSYNNFSGDLPYSFGSLRNLARLFLQNNRFTGSVTYLAELPLTDLNIQDNLFSGILPQHFQSILNLWIGDNKFHVADNSPPWTFPPDTMSIEQNTSIPPTTQANVTQNYSRPSEAPPRVNETHPRVNETHTRVREAPPRVHDAHPNVNEAHPKVNEASPGLREARPRVNGDHPKVNEVHPRVHEAPPRVHEAHPKVNEAPSGVSEAPPGVSEAPPGVNEAHPRVNEAPVKVIKHKKNNVGPGGIAFMIGGGTLMATGVALFVAILLNKLRLESPNLKSSESSHGSFPSHPTSATIGFSKSDRYSGRTKIYTVAELELATNCFSEANILGEGSLGPVYRAKFPDDKILAVKEINIAQMSLKEEEKLLDVICTVSRLKHPNIVALKGYCLDKGKGLLVYDYVGNVTLNDALHSEACEPVSWVHRLRIALGVAQALDYLHSAFCRPVAHGNLKAANVLLDENLMPRVCDCSLVILRTLTISQVEKPANEIDIEEMGYHAPDHGQQGTGSRKRDVFAFGVLLLELLTGKKPFDRARPVDEQYLVKWAPPMLPYRASLEQLVDPRMKRTFSSKALSRYADIISLCIQPARQLRPAMSEVMESLESLYQMFDIEKSDVADGTELDPV* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0009 765 SUPERFAMILY L domain-like 26 212 - -
Vra3g0009 765 PANTHER OS01G0253100 PROTEIN 2 264 IPR045271 GO:0004714|GO:0006468
Vra3g0009 765 PANTHER OS01G0253100 PROTEIN 369 437 IPR045271 GO:0004714|GO:0006468
Vra3g0009 765 PANTHER OS01G0253100 PROTEIN 440 759 IPR045271 GO:0004714|GO:0006468
Vra3g0009 765 Gene3D Transferase(Phosphotransferase) domain 1 545 761 - -
Vra3g0009 765 ProSiteProfiles Protein kinase domain profile. 466 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0009 765 PANTHER STRUBBELIG-RECEPTOR FAMILY PROTEIN 2 264 - -
Vra3g0009 765 PANTHER STRUBBELIG-RECEPTOR FAMILY PROTEIN 369 437 - -
Vra3g0009 765 PANTHER STRUBBELIG-RECEPTOR FAMILY PROTEIN 440 759 - -
Vra3g0009 765 MobiDBLite consensus disorder prediction 342 365 - -
Vra3g0009 765 Pfam Protein tyrosine and serine/threonine kinase 470 742 IPR001245 GO:0004672|GO:0006468
Vra3g0009 765 Gene3D Ribonuclease Inhibitor 26 240 IPR032675 -
Vra3g0009 765 Gene3D Phosphorylase Kinase; domain 1 435 543 - -
Vra3g0009 765 MobiDBLite consensus disorder prediction 265 293 - -
Vra3g0009 765 MobiDBLite consensus disorder prediction 231 322 - -
Vra3g0009 765 MobiDBLite consensus disorder prediction 300 322 - -
Vra3g0009 765 Pfam Leucine rich repeat 114 174 IPR001611 GO:0005515
Vra3g0009 765 MobiDBLite consensus disorder prediction 231 259 - -
Vra3g0009 765 SUPERFAMILY Protein kinase-like (PK-like) 445 743 IPR011009 -
Vra3g0009 765 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0009 Vra-Chr3 109440 115408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0009 441 761 Strubbelig Receptor Gene Family AT5G06820 54.037 5.31e-106 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vra3g0009 PK_Tyr_Ser-Thr 1.3e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0009 - - vra:106757519 1520.37