Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0008 ATGGCAGGAACTGGTTTCTACACCTCCTGTCTTTCCTCTTCCAGCAACTTAGGGGCATGTTGGTTGGTATTGAAAACTCACAATGCAAGGGCACTGCCAGGGAAACTACCTGGAACTGGAATGAGAAGATTGGCAATAAGAGCAGAAGTTGAATTTGTGAACGCTGACAAGGCGAAGGAACTTGTAGAAGTGGATGGGTATGCTGTTCTTGACGTGAGGGACAAGAATCAATTTGAACGAGCTCACATAAAATCTTGTAGTCATGTGCCTCTTTTTATTGAAAACAAAGACAATGATCCTGGTACTATTATCAAAAGGCAACTGCACAATAATTTTTCTGGGTTGTTCTTTGGGTTGCCATTCACTAAGCCAAATCCTGATTTTATACAATCTGTTAAGACCCAGTTTCCACCTGAAAGTAAACTCTTGGTTGTGTGCCAGGAAGGACTGAGGTCTGCTGCAGCAGCAGATAAGTTAGAGAAAGCTGGTTATAAAAATATAGCATCCATAACATCTGGCCTTCAAACCGTAAAACCAGGGACATTTGAGTCTGTAGGGTCCACAGAGTTGGAGAATGCAGGCAAAGCTGGTTTGGTGACAATCCAAGGAAAAATCTCAACTGTGTTGGGAACTATTCTTGTTTGTGCGTATATATTCGTTACATTCTTCCCTGATCAAGCAGAGAAGCTATTCCAATTGGCCCCTACAGGATAA 714 0.423 MAGTGFYTSCLSSSSNLGACWLVLKTHNARALPGKLPGTGMRRLAIRAEVEFVNADKAKELVEVDGYAVLDVRDKNQFERAHIKSCSHVPLFIENKDNDPGTIIKRQLHNNFSGLFFGLPFTKPNPDFIQSVKTQFPPESKLLVVCQEGLRSAAAADKLEKAGYKNIASITSGLQTVKPGTFESVGSTELENAGKAGLVTIQGKISTVLGTILVCAYIFVTFFPDQAEKLFQLAPTG* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0008 237 Pfam Rhodanese-like domain 55 174 IPR001763 -
Vra3g0008 237 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 41 175 IPR036873 -
Vra3g0008 237 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 9, CHLOROPLASTIC 1 236 IPR044615 -
Vra3g0008 237 SMART rhod_4 53 183 IPR001763 -
Vra3g0008 237 Gene3D - 42 182 IPR036873 -
Vra3g0008 237 CDD RHOD 58 178 - -
Vra3g0008 237 ProSiteProfiles Rhodanese domain profile. 63 186 IPR001763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0008 Vra-Chr3 103800 106232 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0008 9 231 Sulfurtransferasese or Rhodanese AT2G42220 67.265 2.06e-109 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0008 - - gsj:114398290 429.483