Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0007 ATGGGTCCCCAAAGCAACCTTCTATCTCTTTTGGTTGCTCTGGCAGCAGTTTTTTCATCTTTGTATCTCATAAATCCAATTCCACAGTATCTCATAAATGCCTTGTCACCTTCATCTGCATACTTGGGAAAACCTTTATCAGGGAATTTCCAAAGACATCACAAGAAACACCCTGATAGTGGGAACACCGATTCTATTTGTGATGATTTTCCACCAGGAATTCCACCTCCAGATACCAGTAACACTTCGTATCTCTGTGTTGATCGAAAAGGGTGTTGTAATTTCACAACAGTACAAGCAGCCGTGAATGCAGTTCCAGATTTTAGTGTCAAAAGAACCATAATATGGATAAACAGTGGCATGTACTATGAGAAGGTTATGGTGCCAAAAACAAAACCCAACATTACATTTCAAGGACAAGGCTATACTTCAACTGCAATTGCATGGAATGACACCGCATTATCCGCGAATGGAACGTTTTACAGTGGCTCTGTACAAGTTTTCGCCTCCAATTTCATTGCTAAGAACATAAGCTTCATGAATTTAGCACCAATGCCAAGTCCTGGAGCTGTAGGGGCACAAGCAGTAGCCATTAGAGTATCTGGAGATCAATCTGAATTTAAAGGCTGTGGATTCTTTGGAGCACAGGACACCCTTCATGATGATAAGGGTCGCCATTACTTCAAAGATTGCTATATTCAAGGCTCCATTGACTTCATATTCGGCAATGCAAGGTCCCTCTACGTGAACTGCGAAATAGTTTCTATAGCGAACCCTGTACCGGTGGGACAAAGGAGCATAAATGGCGCTGTTACAGCTCATGGTAGAGTTTCAGGTGATGAAAACACAGGGTTTGCATTTGTGAACAGTACAGTTGGAGGAAACGGTAGAATCTGGTTGGGTCGAGCATGGAGACCTTATTCTCGTGTTGTCTTTGCCTTCACATCAATGTCTGATATCATTGCTCCCGAAGGTTGGAATGATTTCAACGACCCTTCTAGAGACCAGACTATCTTCTATGGAGAATATAACTGCTCAGGGTCAGGTGCTAACACAAACTTGAGGGCACCTTACGTACAGAAATTAAATGAAACACAAGCTTCTGCTTTCCTCAATATTACTTTTATAGATGGCGAGCAATGGTTGGAAACTTCTAAATAA 1161 0.4195 MGPQSNLLSLLVALAAVFSSLYLINPIPQYLINALSPSSAYLGKPLSGNFQRHHKKHPDSGNTDSICDDFPPGIPPPDTSNTSYLCVDRKGCCNFTTVQAAVNAVPDFSVKRTIIWINSGMYYEKVMVPKTKPNITFQGQGYTSTAIAWNDTALSANGTFYSGSVQVFASNFIAKNISFMNLAPMPSPGAVGAQAVAIRVSGDQSEFKGCGFFGAQDTLHDDKGRHYFKDCYIQGSIDFIFGNARSLYVNCEIVSIANPVPVGQRSINGAVTAHGRVSGDENTGFAFVNSTVGGNGRIWLGRAWRPYSRVVFAFTSMSDIIAPEGWNDFNDPSRDQTIFYGEYNCSGSGANTNLRAPYVQKLNETQASAFLNITFIDGEQWLETSK* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0007 386 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 41 384 - -
Vra3g0007 386 PANTHER PECTINESTERASE 8-RELATED 41 384 - -
Vra3g0007 386 SUPERFAMILY Pectin lyase-like 84 383 IPR011050 -
Vra3g0007 386 ProSitePatterns Pectinesterase signature 2. 233 242 IPR033131 -
Vra3g0007 386 Pfam Pectinesterase 87 378 IPR000070 GO:0030599|GO:0042545
Vra3g0007 386 Gene3D - 79 386 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0007 Vra-Chr3 99584 101301 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0007 56 385 Carbohydrate Esterase AT1G05310 72.424 0.0 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0007 - - gmx:100806629 716.842