Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0004 ATGCAGAGGCCTCCACCGGAAGATTTTCTGTTGAAGGAGACCAAGCCCCACCTCGGTGGGGGAAAGGTCTCCGGTGACAAGCTTACCAGCACATATGACCTTGTTGAGCAAATGCAGTACCTGTACGTGAGGGTTGTGAAGGCTAAGGACTTGCCTGCAAAGGATGTCACCGGCAGTTGTGACCCTTATACTGAAGTGAAGTTGGGGAACTACAAAGGCACCACACGGCACTTCGAGAAGAAGAGTAATCCCGAATGGAACCAGGTTTTTGCTTTCTCGAAAGACCGCATTCAGGCTTCCATTCTGGAGGTCACTGTGAAGGATAAGGATGTTGTGAGGGATGATTTCATCGGTCGGGTGTTGTTCGACCTGAATGAGGTCCCAAAGCGTGTTCCACCTGATAGTCCTCTTGCACCACAGTGGTATAGATTGGAGGATAGGAAGGGTGATAAGGCGAAGGGGGAGCTAATGCTGGCTGTTTGGATGGGCACACAGGCTGATGAAGCATTTCCCGAAGCATGGCACTCAGATGCTGCGACGGTTACTGGGACTGATGCTCTTGCCAACATTAGATCAAAGGTGTATCTGTCTCCTAAGCTTTGGTATTTGAGGGTTAATGTGATAGAGGCGCAAGACTTGCAGCCGAGTGACAAGGGTAGGTACCCTGAAGTTTTTGTTAAGGCTTCTCTGGGAAATCAGACCTTGAGGACTAGAATCTCTCAAAGCAGGACTATCAATCCAATGTGGAATGAGGATATGATGTTTGTGGCTGCTGAACCATTCGAGGAGCCTCTGATTTTGAGTGTGGAAGACAGAGTTGCCCCTAACAAGGAGGAATCACTTGGGAGGTGTGCTATTTCTTTACAAATGGTGGAGCGGAGACTGGATTACAAACCTGTGAATACCAAGTGGTATAACATCGAAAAACACGTTGTTATAATGGAAGGAGAAAAGAAGAAGGAAATCAAGTTTTCAAGCAAGATTCATACGAGGATCTGTCTGGAAGGTGGTTATCATGTTTTGGATGAATCAACTCACTACAGCAGTGATCTTCGCCCAACTGCTAAACAGCTTTGGAAGTCCAGTATTGGAGTTCTTGAATTGGGGATATTGAATGCACAGGGTTTGATGCCAATGAAAACAAAAGATGGTAAGGGAACAACAGATGCCTATTGTGTAGCAAAATATGGGCAGAAGTGGGTGAGGACAAGGACAATCATTGATAGCTTCGCACCCCGGTGGAATGAGCAATATACTTGGGAGGTTTTTGATCCTTGCACTGTCATTACAATTGGTGTCTTTGATAACTGTCATTTGCATGGTGGTGATAAGGGTGGAGGAGCAAAAGATTCCAAAATTGGGAAGGTAAGAATCCGTCTTTCCACCCTTGAGACTGACCGTGTCTATACACATTCGTATCCTCTTCTAGTTCTTCATCCAAATGGGGTGAAGAAAATGGGTGAAATCCACTTGGCTGTAAGGTTTACTTGTTCTTCTTTGCTTAATATGATGCACATGTATTCACTGCCTTTGTTGCCTAAGATGCATTATATTCACCCACTAACTGTTAGCCAGCTTGACAATTTGAGGCATCAAGCTACTCAGATTGTTTCAATGAGACTGAGTCGTGCCGAGCCACCCTTGAGAAAGGAGATAGTGGAATATATGCTGGATGTGGGTTCCCACATGTGGAGCATGAGAAGAAGCAAGGCCAACTTTTTCAGGATCATGGGAGTTTTAAGTGGACTAATAGCAGTAGGAAAATGGTTTGACCAAATCTGCAATTGGAAAAATCCAATCACAACAGTTCTGATCCATATCCTGTTCATAATATTGGTCATGTACCCTGAGCTTATCTTACCTACAATATTCCTATACCTCTTCTTGATTGGAGTTTGGTACTATAGATGGAGGCCAAGACACCCTCCTCACATGGACACTCGTCTCTCTCATGCAGATTCTGCTCACCCAGATGAACTTGATGAAGAGTTTGACACATTCCCAACCACCAGACCTTCGGACATCGTGAGGATGAGATATGATAGGCTTAGAAGCATTGCTGGGAGGATACAGACAGTGGTTGGTGATTTGGCCACACAAGGGGAGAGGCTGCAGTCTTTGCTCAGCTGGAGGGACCCAAGAGCTACTGCACTCTTTGTCATCTTCTGTCTGGTTGCTGCCATTGTACTCTATGTCACTCCATTCCAGGTTGTGGCACTTCTCACTGGAATCTATGTATTGAGACACCCCAGGTTCCGCCACAAGCTTCCTTCAGTCCCTCTCAATTTCTTCAGAAGGCTGCCTGCAAGAACTGATTGCATGCTTTGA 2328 0.4575 MQRPPPEDFLLKETKPHLGGGKVSGDKLTSTYDLVEQMQYLYVRVVKAKDLPAKDVTGSCDPYTEVKLGNYKGTTRHFEKKSNPEWNQVFAFSKDRIQASILEVTVKDKDVVRDDFIGRVLFDLNEVPKRVPPDSPLAPQWYRLEDRKGDKAKGELMLAVWMGTQADEAFPEAWHSDAATVTGTDALANIRSKVYLSPKLWYLRVNVIEAQDLQPSDKGRYPEVFVKASLGNQTLRTRISQSRTINPMWNEDMMFVAAEPFEEPLILSVEDRVAPNKEESLGRCAISLQMVERRLDYKPVNTKWYNIEKHVVIMEGEKKKEIKFSSKIHTRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGKGTTDAYCVAKYGQKWVRTRTIIDSFAPRWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKGGGAKDSKIGKVRIRLSTLETDRVYTHSYPLLVLHPNGVKKMGEIHLAVRFTCSSLLNMMHMYSLPLLPKMHYIHPLTVSQLDNLRHQATQIVSMRLSRAEPPLRKEIVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFDQICNWKNPITTVLIHILFIILVMYPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEEFDTFPTTRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLVAAIVLYVTPFQVVALLTGIYVLRHPRFRHKLPSVPLNFFRRLPARTDCML* 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0004 775 SMART C2_3c 202 300 IPR000008 -
Vra3g0004 775 SMART C2_3c 365 472 IPR000008 -
Vra3g0004 775 SMART C2_3c 40 136 IPR000008 -
Vra3g0004 775 ProSiteProfiles C2 domain profile. 181 305 IPR000008 -
Vra3g0004 775 ProSiteProfiles C2 domain profile. 22 142 IPR000008 -
Vra3g0004 775 MobiDBLite consensus disorder prediction 1 15 - -
Vra3g0004 775 Pfam C2 domain 365 475 IPR000008 -
Vra3g0004 775 Pfam C2 domain 201 307 IPR000008 -
Vra3g0004 775 Pfam C2 domain 40 142 IPR000008 -
Vra3g0004 775 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 355 IPR035892 -
Vra3g0004 775 MobiDBLite consensus disorder prediction 1 23 - -
Vra3g0004 775 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 40 178 IPR035892 -
Vra3g0004 775 Gene3D C2 domain 188 332 IPR035892 -
Vra3g0004 775 ProSiteProfiles C2 domain profile. 347 473 IPR000008 -
Vra3g0004 775 Pfam Plant phosphoribosyltransferase C-terminal 620 775 IPR013583 -
Vra3g0004 775 CDD C2D_MCTP_PRT_plant 365 492 - -
Vra3g0004 775 CDD C2C_MCTP_PRT_plant 202 353 - -
Vra3g0004 775 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 364 505 IPR035892 -
Vra3g0004 775 PANTHER C2 CALCIUM/LIPID-BINDING PLANT PHOSPHORIBOSYLTRANSFERASE FAMILY PROTEIN 1 775 - -
Vra3g0004 775 PANTHER PROTEIN QUIRKY-LIKE 1 775 - -
Vra3g0004 775 CDD C2B_MCTP_PRT_plant 40 164 - -
Vra3g0004 775 Gene3D C2 domain 39 161 IPR035892 -
Vra3g0004 775 Gene3D C2 domain 340 496 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0004 Vra-Chr3 54861 58688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0004 1 775 Lipid Metabolism Gene Families AT3G57880 90.452 0.0 1487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0004 - - gmx:100818371 1531.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0004 3 54861 58688 Vra5g2158 5 27439355 27442146 ECH
Vra3g0004 3 54861 58688 Vra2g1662 2 24749263 24752250 ECH
Vra3g0004 3 54861 58688 Vra3g0004 3 54861 58688 ECH
Vra3g0004 3 54861 58688 Vra8g0250 8 3149415 3153199 PCT