Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0003 ATGGCTTCCAAGACCACCAACCAAACAACAAATAATCAATTGGAACCACTTCCACCACCTCAGCACCGTCACCCTCATCCTCATCATTATCAGTTACAACAACACCAACCCCAAAACCATCAAGTTCATGATCATCAAATTTCTTTTGGAATGATGCAATCCTCTTCTTCGTCTTCCTCTATCCCTGGAAACTACCTAGGCAAGGATTCCGGCGCTTATGACTTGGGTGAATTGGATCAAGCCTTTTTCCTTTACCTTGATGGACAAGCAGACCCCTCCACTGTTCAAGACCAAAGACAGAACTCATCATCCGGAATGAGGCCTCCGACTCTCAACATTTTCCCATCCAAGCCTATGCACGTAGAGCCATCATCATCCAAGTCCAAGGCTAACATAGAGTTAGTTTCTCCGCAAACAAGTGGTTCAAAGAGACCATCAGAGCCGTCGATGGAGTTGGCCAACCCTCGAAACGAAGCTGCTTCTGCCCCTCAACCACCCAAAGCTGTCAAGCGAGAGAGCAACCGCAAAGGTCCAACGTCGAGTTCTGAACAAGAAGGACCAAAAACACCAGATCCTAAGACACTGAGAAGACTTGCTCAGAATAGAGAGGCAGCTAGGAAAAGCAGGCTTAGGAAAAAGGCATATGTTCAACAGCTAGAGTCAAGTAGGGTTAGGCTTAATCAGCTGGAACAAGAGCTACAACGTGCTAGAACTCAGGGCATGTTCTTGGGTGGAGGTTCACTTTTGGGAGGAGAGCAAAGCCTCCCTGTCGCTATGAATACCATTAGCTCGGAGGCTGCAATGTTTGACGTGGAATATGCAAGATGGGTTGAAGAGCACCACCGCATAGTGTGTGAGCTAAGAGCTGCAGTGCAAGAGCACCTTCCCGAGAACGAGCTTAGACTCTTTGTGGACAATTGCTTGGCGCATTATGACCAAGTAATGAACCTCAAGAGCCTAGTGGCCAAAACAGACGTGTTTCATCTTGTTTCTGGCATGTGGAAAACCCCAGCTGAACGTTGCTTCATGTGGATCGGAGGATTCAAGCCTTCTGAACTCATTAAGATTATTCTGAGTCAAATTGAGCCTCTGACGGAACAACAAATATTAGGTATATGTGGATTACAACAATCGACTCAAGAGGCAGAAGAGGCTCTCTCTCAAGGGCTCGAGGCTCTCAATCAATCTATTTCGGACACCATAGCTTCAGACTCTCTAAGCTATCCTCTCAATATGGCTAACTATATGGGACAAATGGCTGTGGCCATGAACAAGCTCTCAACTCTCGAAGGTTTCGTTAGACAGGCAGATAATCTTCGGCACCAAACCATTCACCGTCTGCATCAACTCCTAACGACGCGTCAAGCAGCAAGGTGTTTTCTGGCGATAGCCGAGTACTTCCATCGTCTTCGAGCTCTGAGTTCATTGTGGTTGGCGCGCCCTCGCGTTGAATAG 1455 0.4735 MASKTTNQTTNNQLEPLPPPQHRHPHPHHYQLQQHQPQNHQVHDHQISFGMMQSSSSSSSIPGNYLGKDSGAYDLGELDQAFFLYLDGQADPSTVQDQRQNSSSGMRPPTLNIFPSKPMHVEPSSSKSKANIELVSPQTSGSKRPSEPSMELANPRNEAASAPQPPKAVKRESNRKGPTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRVRLNQLEQELQRARTQGMFLGGGSLLGGEQSLPVAMNTISSEAAMFDVEYARWVEEHHRIVCELRAAVQEHLPENELRLFVDNCLAHYDQVMNLKSLVAKTDVFHLVSGMWKTPAERCFMWIGGFKPSELIKIILSQIEPLTEQQILGICGLQQSTQEAEEALSQGLEALNQSISDTIASDSLSYPLNMANYMGQMAVAMNKLSTLEGFVRQADNLRHQTIHRLHQLLTTRQAARCFLAIAEYFHRLRALSSLWLARPRVE* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0003 484 Pfam Seed dormancy control 284 358 IPR025422 GO:0006351|GO:0043565
Vra3g0003 484 Pfam bZIP transcription factor 193 228 IPR004827 GO:0003700|GO:0006355
Vra3g0003 484 MobiDBLite consensus disorder prediction 1 43 - -
Vra3g0003 484 MobiDBLite consensus disorder prediction 119 147 - -
Vra3g0003 484 ProSiteProfiles DOG1 domain profile. 266 480 IPR025422 GO:0006351|GO:0043565
Vra3g0003 484 Gene3D - 192 242 - -
Vra3g0003 484 SMART brlzneu 189 262 IPR004827 GO:0003700|GO:0006355
Vra3g0003 484 PANTHER TRANSCRIPTION FACTOR TGA9 81 482 - -
Vra3g0003 484 MobiDBLite consensus disorder prediction 1 17 - -
Vra3g0003 484 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 196 211 IPR004827 GO:0003700|GO:0006355
Vra3g0003 484 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 191 235 IPR004827 GO:0003700|GO:0006355
Vra3g0003 484 MobiDBLite consensus disorder prediction 92 110 - -
Vra3g0003 484 Coils Coil 212 239 - -
Vra3g0003 484 SUPERFAMILY Leucine zipper domain 193 235 IPR046347 GO:0003700|GO:0006355
Vra3g0003 484 MobiDBLite consensus disorder prediction 92 196 - -
Vra3g0003 484 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 81 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0003 Vra-Chr3 16198 23320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0003 63 482 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 65.306 0.0 564
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra3g0003 DOG1 4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0003 K14431 - gmx:100815176 816.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0003 3 16198 23320 Vra3g0003 3 16198 23320 ECH
Vra3g0003 3 16198 23320 Vra8g0251 8 3177802 3184464 PCT