Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1699 ATGGGGAAGATAGAAAAAACAATAATGGCTTTCATACAACCTTTTCTATCACCCTTCAGCTCATCATCTCTGATGGCTATCCTCCTGGTTTTCATCACCCTTCTCTTTTCCTTCTCCTCTCCTTCATTGGCCTTGTCTCCCTCAGATATCTTCCAACCAAAAGATAATTTCTTGATCGATTGTGGAGCAGACAGTGTTTCCACCCTCCCTGATGGACGACATTTCAAAACAGACCCTCAAGCAACTTCTTTCTTGAAAGCCAATGATGAGTACAAAGTCAATGCAGAAAATGCAAATTTTTCTAGCCCTTTATACAAGAGTGCAAGGATCTTCATCCAGGAAGCAATATACTCCTTCCATTTGGTCCAGCCAGGTTTTCACTGGGTTCGCCTTCATTTCTACCCCGTCAAGAACAATGTCTTTGATCTCCAGAAGGCCACTTTCTCTGTCTTCACCGATACCTACGTGCTTCTCCACAGTTTCAATGTCAACAACACTGACAAGCCAATCCTCAAGGAGTACCTCATCAATGTAACTGAGCCTCATTTCTCTATTTCCTTCATCCCCTTGAAGAACTCAGCCGCTTTCATCAATGCCATTGAGGTTGTTTCGGCTCCTGATGAACTTATCTTTGACACCGCCACCAGCCTTTTCCCTGTGGAGGAGTTCTCCGGCATCACATCCTATGGCTTGCAGCCTGTTTTCAGGGTCAACAATGGAGGGCCTCTCATCACCTCATCGAATGATACCCTTGGGAGGACTTGGGATCCTGATGAGGGTTTCCTCACAAACAAGAACTTGGCCAAGAGTGTCTCGGTGGCTACCAATGTGGTTAAATTCCCCCAACACAATCCTGCAATCTCCTCTCTTACAGCCCCACAAACTGTGTATGCTTCTGCCACTGAGATGGCTGATGCTGGTGTTAACCAGCCAAATTTCAACGTCTCGTGGAAATTTGATGTGGACACTTCTTTTAGCTACCTTGTTAGGCTTCACTTCTGTGATATTGTTAGCAAAGGGCTCAATCAACTCTACTTTAATGTGTATATTAATGGGAAAATGGCAATCTCTAACTTTGATTTGTCAGCCACCACGGGTGCCTTGTCAACCCCATATTACAAGGACATTGTGGTGAATGCAACATTGATGACAGAGGAGGGACTATCAATTCAGGTTGGTCCAACCACTGGTGGTAGTGCAAGTGCCAATGCCCTTGTGAACGGCATAGAGGTCATAAAGATGAGCAACTCTGTGAACAGTTTGGATGGAGAATTTGGGGTTGATGGAAGAAGTGTTAGTGGTTCTAGCCGCGGCACGGTGGCTGCAGTTGGATTTGCCATGATGTTTGGAGCCTTTGTTGGGCTCGGAGCTATGGTGATCAAGTGGCACAAGAGGCCTCAAGATTGGCAGAAGAGGAACAGCTTCTCTTCATGGTTGCTGCCTCTGCATGCTGGTGACACAAGCTTCATGAGCAGCAAGAACTCGATGGGAAAGAGCAACTTTTTCTCCTCATCAATGGGACTAGGCCGGTACTTCTCCTTCGCTGAACTTCAGGAAGCAACCAAGAACTTTGACTCAAAGAACATCATTGGTGTTGGTGGATTCGGCAATGTGTATTTGGGTGTGATAGACGAGGGGACTCAAGTGGCAGTCAAGAGAGGAAACCCTCAATCAGAGCAAGGCATCAACGAATTCCAGACAGAAATCCAAATGTTGTCAAAGCTCAGGCACAGGCACTTGGTGTCCTTGATTGGATACTGTGATGAGAATGATGAGATGATCCTGGTTTATGAGTACATGCCCAATGGACACTTCAGAGACCATCTTTATGGAAAGAACATGCCTCCTCTCTCATGGAAGCAAAGACTAGAGATCTGCATTGGTTCAGCTCGTGGCCTTCACTACCTTCACACAGGCACAGCTCAAGGCATCATTCACCGTGATGTCAAGACCACCAATATCTTGCTTGATGAGAATTTGACAGCCAAGGTTTCTGATTTTGGACTTTCCAAGGATGCACCAATGGGGCAGGGACATGTTAGCACTGCAGTGAAGGGTAGCTTTGGTTATCTTGACCCTGAGTACTTCAGAAGACAGCAACTCACAGAAAAATCTGATGTGTACTCCTTTGGGGTGGTTCTGCTTGAGGCACTGTGTGCAAGGCCAGCCATCAACCCTCAGTTGCCCCGTGAGCAAGTAAACTTGGCCGATTGGGCGATGCAGTGGAAGAGAAAGGGCTTGCTAGACAAGATCATAGACCCTCAACTGATTGGATCAATCAATCCTGAATCTATGAAGAAGTTTGCTGAGGCTGCTGAGAAGTGTTTGGCTGATCATGGAGTGGATAGGCCTTCAATGGGAGATGTTTTGTGGAACTTGGAGTATGCTTTGCAGCTTCAAGAGGCCTTCACACAAGGAAAGCCTGAGGAGGCTCCTCCTTCACCTCCCCCACAAGCACCTGCCACTCCTACTGGTGACCCTACGACGCTGCCGCCAGCTCCAGCAGCACCAGCAGCACCAGCGGCGGCAGTGCCACGTGCAGAAGTGAATAATGCTACACCAGAAGTGCATTCTATTGATGACCATTCTGGAACTGCAATGTTTGCTCAGTTTAACAATCTCAATGGCAGGTGA 2634 0.4708 MGKIEKTIMAFIQPFLSPFSSSSLMAILLVFITLLFSFSSPSLALSPSDIFQPKDNFLIDCGADSVSTLPDGRHFKTDPQATSFLKANDEYKVNAENANFSSPLYKSARIFIQEAIYSFHLVQPGFHWVRLHFYPVKNNVFDLQKATFSVFTDTYVLLHSFNVNNTDKPILKEYLINVTEPHFSISFIPLKNSAAFINAIEVVSAPDELIFDTATSLFPVEEFSGITSYGLQPVFRVNNGGPLITSSNDTLGRTWDPDEGFLTNKNLAKSVSVATNVVKFPQHNPAISSLTAPQTVYASATEMADAGVNQPNFNVSWKFDVDTSFSYLVRLHFCDIVSKGLNQLYFNVYINGKMAISNFDLSATTGALSTPYYKDIVVNATLMTEEGLSIQVGPTTGGSASANALVNGIEVIKMSNSVNSLDGEFGVDGRSVSGSSRGTVAAVGFAMMFGAFVGLGAMVIKWHKRPQDWQKRNSFSSWLLPLHAGDTSFMSSKNSMGKSNFFSSSMGLGRYFSFAELQEATKNFDSKNIIGVGGFGNVYLGVIDEGTQVAVKRGNPQSEQGINEFQTEIQMLSKLRHRHLVSLIGYCDENDEMILVYEYMPNGHFRDHLYGKNMPPLSWKQRLEICIGSARGLHYLHTGTAQGIIHRDVKTTNILLDENLTAKVSDFGLSKDAPMGQGHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLLEALCARPAINPQLPREQVNLADWAMQWKRKGLLDKIIDPQLIGSINPESMKKFAEAAEKCLADHGVDRPSMGDVLWNLEYALQLQEAFTQGKPEEAPPSPPPQAPATPTGDPTTLPPAPAAPAAPAAAVPRAEVNNATPEVHSIDDHSGTAMFAQFNNLNGR* 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1699 877 Pfam Protein tyrosine and serine/threonine kinase 527 787 IPR001245 GO:0004672|GO:0006468
Vra2g1699 877 Gene3D - 56 206 - -
Vra2g1699 877 Gene3D - 232 416 - -
Vra2g1699 877 ProSitePatterns Protein kinases ATP-binding region signature. 530 552 IPR017441 GO:0005524
Vra2g1699 877 PANTHER OS07G0166700 PROTEIN 41 851 IPR045272 GO:0004714|GO:0006468
Vra2g1699 877 SMART serkin_6 524 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1699 877 MobiDBLite consensus disorder prediction 809 839 - -
Vra2g1699 877 Pfam Malectin-like domain 59 413 IPR024788 -
Vra2g1699 877 SUPERFAMILY Protein kinase-like (PK-like) 507 791 IPR011009 -
Vra2g1699 877 ProSiteProfiles Protein kinase domain profile. 524 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1699 877 ProSitePatterns Serine/Threonine protein kinases active-site signature. 644 656 IPR008271 GO:0004672|GO:0006468
Vra2g1699 877 Gene3D Transferase(Phosphotransferase) domain 1 600 810 - -
Vra2g1699 877 CDD STKc_IRAK 530 794 - -
Vra2g1699 877 PANTHER BNAC03G60370D PROTEIN 41 851 - -
Vra2g1699 877 MobiDBLite consensus disorder prediction 804 864 - -
Vra2g1699 877 Gene3D Phosphorylase Kinase; domain 1 486 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1699 Vra-Chr2 25296457 25300151 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1699 51 877 Receptor kinase-like Gene Family AT4G39110 67.904 0.0 1185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vra2g1699 Malectin_like 4.9e-40 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1699 - - pvu:PHAVU_011G210400g 1499.95