LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra2g1691	ATGAGTGATGTTCAAGAAAATGATACACTGAATACTCTTTATGAGGTTTCATTGAGAGGTAGTGTTTCTGAGTTAGAAACTCTGATTAGAAGAGACCCTCTTATCCTTCACAGAATTTCCTTAACAACATTCACTGAAACTCCTTTGCACATATCAGCTTTACTTGGTCACCTTGATTTCACAAAGTCCCTTCTGACTCACAAACCTCAACTTGCTCTTGAGACTGACCACTGCAAACGCACCCCTCTTCATCTGGCTTCTGCTGAAGGCCATGTAGAGATTGTTCATGTTTTGCTGCAGACATGTGAAGATGCATGCTTGATGACTGACCAAGATGGAAGGATTCCTCTTCATTATGCAGCTATGAGAGGAAGGACAGAGGTTGCAAGACAGTTGATTAGTGGAGCAAAGTCAGAATCTGTGATGGTGTTTGATGGATCAGGAAAAACTATGTTTCACCTTTGTGTCGAGCACAATCATTTGGAGACTTTGAAAACACTGGTGGAAGTTGGAAATGTCAGGGAGGATTTTCTAAACTGTGGAGACTTTCATCATGGAAATACCATTCTCCATTTGGCTGTTATGTTCAAGCAACTTGAGAGTGTAAGGTACTTGCTCTCAATATCCAAAATAAAAGAAGAAGCAAATATTGAGAACAAGATGGGTTACACTGCTTTGGACATGCTAGAGCATGTTCCAAAAGACATGAGAAGTCTTCAAATAAAACTCATGCTGATGGACGCCGGATTCAAGAAGAATGAAAATAACCAAGTTCATCATCCACCATCTGCATCAATCATAGATGTTCCTCCATCAAGGACACCGAATCCAAATGAAAAGTTTTGGATTAACTCTTTGAAGCGTGTGAACAAGGTCTTACAACATAAGAGTGGTAGGTTGGAAGAAATGAGAGGCATGTTGAGTTTGGTGTCTACAATGATCTCAACCGTCACCTTTGGTGTTGTGATCAATCCACCAGGTGGTAATATATCTATCGAGTCACTTCTATATGTACAATATAGAGAAATGTTGACTAGTTTCTTAACGATGAACACAATCTCTTTCATTGCATCACTTGGTGTCACTCTCTTACTTATAAGTGGAGTTCCCTTAAAGAATGAAATCACAATGGGACTGTTATCAGTAGGCACATGTGTCTGTCTCACATTTCTTGTGCTTACTTACATACATGCTGTGCCTTTGAACAAAAATATGTATTTTGGGGACACATTTTCTGTGTTGTTTTCTTGGCTTGGACTTGTTGGGACAATAGTTGTGTTTACCATAATTCGTGTAATTTCTAAGCTAGTGAAAGTTCTGTAG	1323	0.393	MSDVQENDTLNTLYEVSLRGSVSELETLIRRDPLILHRISLTTFTETPLHISALLGHLDFTKSLLTHKPQLALETDHCKRTPLHLASAEGHVEIVHVLLQTCEDACLMTDQDGRIPLHYAAMRGRTEVARQLISGAKSESVMVFDGSGKTMFHLCVEHNHLETLKTLVEVGNVREDFLNCGDFHHGNTILHLAVMFKQLESVRYLLSISKIKEEANIENKMGYTALDMLEHVPKDMRSLQIKLMLMDAGFKKNENNQVHHPPSASIIDVPPSRTPNPNEKFWINSLKRVNKVLQHKSGRLEEMRGMLSLVSTMISTVTFGVVINPPGGNISIESLLYVQYREMLTSFLTMNTISFIASLGVTLLLISGVPLKNEITMGLLSVGTCVCLTFLVLTYIHAVPLNKNMYFGDTFSVLFSWLGLVGTIVVFTIIRVISKLVKVL*	441

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra2g1691	440	Gene3D	-	2	261	IPR036770	-
	Vra2g1691	440	Pfam	Domain of unknown function	299	398	IPR026961	-
	Vra2g1691	440	SMART	ANK_2a	78	107	IPR002110	GO:0005515
	Vra2g1691	440	SMART	ANK_2a	112	143	IPR002110	GO:0005515
	Vra2g1691	440	SMART	ANK_2a	44	73	IPR002110	GO:0005515
	Vra2g1691	440	SMART	ANK_2a	185	214	IPR002110	GO:0005515
	Vra2g1691	440	SMART	ANK_2a	147	176	IPR002110	GO:0005515
	Vra2g1691	440	ProSiteProfiles	Ankyrin repeat profile.	112	134	IPR002110	GO:0005515
	Vra2g1691	440	ProSiteProfiles	Ankyrin repeat profile.	185	207	IPR002110	GO:0005515
	Vra2g1691	440	PANTHER	HOMEOBOX PROTEIN WARIAI	18	433	-	-
	Vra2g1691	440	SUPERFAMILY	Ankyrin repeat	13	229	IPR036770	-
	Vra2g1691	440	ProSiteProfiles	Ankyrin repeat region circular profile.	185	207	-	-
	Vra2g1691	440	ProSiteProfiles	Ankyrin repeat profile.	78	110	IPR002110	GO:0005515
	Vra2g1691	440	Pfam	Ankyrin repeats (3 copies)	112	171	IPR002110	GO:0005515
	Vra2g1691	440	Pfam	Ankyrin repeats (3 copies)	40	100	IPR002110	GO:0005515
	Vra2g1691	440	PANTHER	ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE	18	433	-	-
	Vra2g1691	440	ProSiteProfiles	Ankyrin repeat region circular profile.	112	134	-	-
	Vra2g1691	440	ProSiteProfiles	Ankyrin repeat region circular profile.	78	100	-	-
	Vra2g1691	440	Pfam	Ankyrin repeat	185	206	IPR002110	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra2g1691	Vra-Chr2	25200950	25203091	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra2g1691	20	361	Miscellaneous Gene Families	AT4G10720	27.654	4.47e-28	113

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra2g1691	-		-	gmx:100796407	498.819