Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1688 ATGCCAGGAAAACCTGACTGTGATGATTACGGTGAGCAGATTCAGTTTCATCCTTGGTGGCGCTCAATTGGGGAAAATGCCTCCAAATCATCTTCAGCTGATCGGTTAAATGGTTCTCCTTCACTGCCTGGAACTGATAAGACAGGTGGTAAAGAGTACCAAAACATCAAACATGACTTGTCTTCAATCTCATTTAGCATGGACAAATACCTTGCTCCCAATCCTCACACAGAATTTGTTGGTCATTCAGTTGTTTTGACATCTCCTTATTCGGATGCACAGTATGGTCAAATATTGACTACTTATGGTCAACAAGTTATGATAAACCCTCCATTGTATGGAATGCATCAAGCTAGAATGCCTTTGCCACTCGAAATGGAAGAGGAGCCTGTTTATGTCAATGCAAAGCAGTATCATGGTATTTTGAGGCGAAGACAGTCACGTGCTAAAGCCGAGCTTGAAAAGAAAGTAATCAGAAACAGAAAGCCATACCTGCACGAGTCTCGACACCTACATGCCATGAGAAGGGCAAGAGGCAATGGTGGTCGCTTTCTCAACACAAAGAAGCTTGAAAATAACAGTTCTAGTGTCACTTCTGACGAAGGCAACAATAGTGGTGCAAACCCCTCAGCAAACTCATTTAACACTCTGCATAGGCCCACCAACAATGAGAATCTAGCCTCATCAAACATGGTTCAGGACATGCAGAGAGTTCAGAGTTTCAACAATGGTTACCATAATGGAAATTGTCTTACAGCACTATACCTTTCACAAGTGAATGGAAAAAAGGAGGGAGGAGACTACTTTGGTAAAGAGAGAGACCCTCTTGGGGCTTTCAAATAG 843 0.427 MPGKPDCDDYGEQIQFHPWWRSIGENASKSSSADRLNGSPSLPGTDKTGGKEYQNIKHDLSSISFSMDKYLAPNPHTEFVGHSVVLTSPYSDAQYGQILTTYGQQVMINPPLYGMHQARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIRNRKPYLHESRHLHAMRRARGNGGRFLNTKKLENNSSSVTSDEGNNSGANPSANSFNTLHRPTNNENLASSNMVQDMQRVQSFNNGYHNGNCLTALYLSQVNGKKEGGDYFGKERDPLGAFK* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1688 280 MobiDBLite consensus disorder prediction 186 225 - -
Vra2g1688 280 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1 27 247 - -
Vra2g1688 280 MobiDBLite consensus disorder prediction 27 52 - -
Vra2g1688 280 MobiDBLite consensus disorder prediction 178 225 - -
Vra2g1688 280 Gene3D - 127 188 - -
Vra2g1688 280 ProSiteProfiles NF-YA/HAP2 family profile. 127 187 IPR001289 GO:0003700|GO:0006355
Vra2g1688 280 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 27 247 IPR001289 GO:0003700|GO:0006355
Vra2g1688 280 ProSitePatterns NF-YA/HAP2 subunit signature. 132 152 IPR018362 GO:0003677|GO:0016602
Vra2g1688 280 SMART cbf3 126 187 IPR001289 GO:0003700|GO:0006355
Vra2g1688 280 MobiDBLite consensus disorder prediction 27 44 - -
Vra2g1688 280 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 129 184 IPR001289 GO:0003700|GO:0006355
Vra2g1688 280 PRINTS CCAAT-binding transcription factor subunit B signature 130 152 IPR001289 GO:0003700|GO:0006355
Vra2g1688 280 PRINTS CCAAT-binding transcription factor subunit B signature 161 184 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1688 Vra-Chr2 25164950 25169607 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1688 24 216 CCAAT-HAP2 Transcription Factor Family AT3G20910 47.059 5.61e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vra2g1688 CBFB_NFYA 2.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1688 K08064 - gmx:100782085 394.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1688 2 25164950 25169607 Vra2g1688 2 25164950 25169607 ECH