Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1678 ATGAATGACGGTAGGCAAATGGGGTTGCATTATGTAGACGCAGGGTTTCCTTATGCTGTGAATGAAAACTTTGTGGATTTCTTTCAAGGATTCTCTCATGTGCCCGTCAATTATGCCTTTGCTGGTTCAATGCCTGATCAGGAAAGTGTCTACTGGTCAATGAACATGAATCCCTATAAGTTTGGATTGTCTGGCCCTGGTAGTACATCTTACTATAGTTCTTATGAGGTAAATGGTCATTTGCCGAGAATGGAGATTGACAGGACTGAGTGGGAATACTCTTCGACAATTACTGCTGTGGAACCAGCTACAACAGATTCTCCGCCTAGAAGAGATGGAGTCTCTAGCATGCAGACCATCCCTGAAGAATGCAGTCCAAATCATCTCGAGTCCAATAGTAGTAGCCAGGTCATATGGCAAGACAACATCGATCCTGATAATATGACTTATGAGGAACTACTGGATTTGGGAGAGGCAGTTGGGACTCAGAGCCGTGGTCTTTCACAAGAACTTATTGATATGCTTCCAACCTCGAAGTACAAATTTGGTAGCTTATTCAAAAGAAAAAATTCTGGGAAAAGGTGTGTAATCTGTCAGATGACATACAGAAGAGGTGACCAGCAAATGAAATTGCCATGCAGCCATGTGTATCATAGTGAATGCATCACCAAGTGGCTCAGCATCAACAAGAAATGTCCTGTGTGCAACACTGAGGTTTTTGGCGAGGAATCAACGCATTAG 741 0.4305 MNDGRQMGLHYVDAGFPYAVNENFVDFFQGFSHVPVNYAFAGSMPDQESVYWSMNMNPYKFGLSGPGSTSYYSSYEVNGHLPRMEIDRTEWEYSSTITAVEPATTDSPPRRDGVSSMQTIPEECSPNHLESNSSSQVIWQDNIDPDNMTYEELLDLGEAVGTQSRGLSQELIDMLPTSKYKFGSLFKRKNSGKRCVICQMTYRRGDQQMKLPCSHVYHSECITKWLSINKKCPVCNTEVFGEESTH* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1678 246 SUPERFAMILY RING/U-box 194 240 - -
Vra2g1678 246 ProSiteProfiles Zinc finger RING-type profile. 195 236 IPR001841 -
Vra2g1678 246 SMART ring_2 195 235 IPR001841 -
Vra2g1678 246 Pfam Ring finger domain 194 236 IPR001841 -
Vra2g1678 246 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 246 IPR033276 GO:0004842|GO:0016567|GO:0046621
Vra2g1678 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 240 IPR013083 -
Vra2g1678 246 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BIG BROTHER 1 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1678 Vra-Chr2 24972445 24978645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1678 10 246 C3H Transcription Factor Family AT3G63530 56.303 1.79e-98 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1678 K19045 - gmx:100792734 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1678 2 24972445 24978645 Vra2g1678 2 24972445 24978645 ECH