Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1676 ATGACAGATCCTAAGTCCAACATGTTCAATGAATGGTTCAACTTCATGCTCTTCCAACCTCACTACTCTTCATCTTCTTCCTCTTCTCAACCCTACCACCCTCTTGCCAATTACTCAAACAACAGGTTTGGAATTCAATTGCAAGGAGCCTCATCTTCATCTTTATCTTCATCTGCATCTTCATCTTCATCTTCATATTCATATGCATATGCATATGCAGCAGCAGCAGCAGCAGCTCCTCCTCCTCCTTCTTCCCCTCCTCTAAGAGAGGCACTTCCTCTCATCAACAAGATAAGCCTGACAGGTGAGCAGCTGCAACAAAATGAACCCTCAAATGTTGTGGAAGAGAGAGAAGAGGAGAAGGAGGAGAACAATGGTGAAGATGGTGATGAAGAAACTGTGACTGTTGCCCTACACATAGGGCTTCCCAGAATGGATACTTGTTCTGATCTGGGGTCATCTAGGGTGTCCTCAACTTGTATGGAAATGGGTGAAAAAGAGGAAGTGAACATAATTTCTGAGCACCCTTTGGATAGATTGAACAAGGGTCAGTATTGGATTCCCACCCCTTCACAGATTCTCATTGGTCCTACACAGTTCCCATGTCCTGTGTGCTCAAAAACTTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGGCCTGATTCTCTGAAAGGAACACAGCCAACAGCTATGCTGAGGCTTCCATGCTTTTGTTGTGCAGCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTCAAGGATTTCAGAACTCTTCAAACACACTACAAGAGAAAGCATGGCATAAAACCCTACATGTGCAGAAAGTGCAGCAAAGCATTTGCAGTAAAAGGTGATTGGAGAACACATGAGAAGAACTGCGGCAAAATATGGTATTGCTTATGTGGGTCTGATTTCAAACACAAAAGGTCCCTAAAAGACCACATCAAGGCCTTTGGCTATGGCCATGGTGCTTTTGGCATTGATTGCTTGCAAGAAGAAGATGAAGCTGCTTCTGAGATTGAACATGATGGAGAACATTCAATATGA 1086 0.4383 MTDPKSNMFNEWFNFMLFQPHYSSSSSSSQPYHPLANYSNNRFGIQLQGASSSSLSSSASSSSSSYSYAYAYAAAAAAAPPPPSSPPLREALPLINKISLTGEQLQQNEPSNVVEEREEEKEENNGEDGDEETVTVALHIGLPRMDTCSDLGSSRVSSTCMEMGEKEEVNIISEHPLDRLNKGQYWIPTPSQILIGPTQFPCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCAAGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCSKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGYGHGAFGIDCLQEEDEAASEIEHDGEHSI* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1676 361 SUPERFAMILY beta-beta-alpha zinc fingers 268 304 IPR036236 -
Vra2g1676 361 SUPERFAMILY beta-beta-alpha zinc fingers 196 222 IPR036236 -
Vra2g1676 361 SMART c2h2final6 284 304 IPR013087 -
Vra2g1676 361 SMART c2h2final6 200 222 IPR013087 -
Vra2g1676 361 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 58 356 - -
Vra2g1676 361 Pfam C2H2-type zinc finger 200 219 - -
Vra2g1676 361 ProSitePatterns Zinc finger C2H2 type domain signature. 202 222 IPR013087 -
Vra2g1676 361 Gene3D Classic Zinc Finger 199 222 - -
Vra2g1676 361 MobiDBLite consensus disorder prediction 101 132 - -
Vra2g1676 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 200 227 IPR013087 -
Vra2g1676 361 Gene3D Classic Zinc Finger 253 333 - -
Vra2g1676 361 PANTHER ZINC FINGER PROTEIN WIP2 58 356 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1676 Vra-Chr2 24910958 24913759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1676 1 359 C2H2 Transcription Factor Family AT3G57670 52.000 1.74e-123 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra2g1676 zf-C2H2_6 2.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1676 - - gmx:100794446 558.525