Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1658 ATGAGAACTGCAAGCTGTTCCCTCATAGTGTTCTTTATTCTGCTGGTTGAGTCAGTGAATTCTCTCAACCGTAGCAGTTTTCCTGTGAATTTCTTATTTGGGGTTGCCTCTTCTTCTTACCAGTATGAAGGTGCAGCAAGTGAAGGGGGTAGAGGACCAAGTATATGGGACACTTTTACTCACAAATATCCATATAGGATAAAGGATCAAAGTAGTGGAGACCTTGTTGTTGATTCTTATCACCGTTACAAGGAAGATGTAGGTATAATGAAGGACATAGGATTTGATGCATACAGATTCTCTATCTCATGGTCTAGGATTCTACCTGGTGGAAGGCTGAAGGGAGGTACAAACAGAGAGGGCATCACATATTACAACAATCTTATCAATGAACTGCTATCAAATGGGCTGCAACCCTTTGTAACTCTATTTCATTGGGATCTCCCTCAAGCCCTTGAAGATGAATATGGTGGCTTTCTAAGCCCCAATATTGTGAAGGATTTTGCAGACTATGCAGAGGTATGCTTCAGAGAATTTGGTGATAGAGTGAAGCACTGGATCACTTTAAATGAGCCAGTCACCTTCACCACACAGGGTTATGGAAATGGATTATTTGCACCAGGAAGATGCTCCAAGTGGTTGCCTTTCAACTGCAGTGAAGGTGATTCTAGCACTGAGCCCTATCTTGTTACTCACCACCAGATTCTTGCTCATGCAGCTACTGTCAAAGTCTATAGAGACAAGTACCAGATTTCTCAAAAAGGACAAATTGGGATAACATTGAACTCTCCATGGATAATGCCACTTTCCCAGTCAAAAGAAGACATCAATGCTGCATTTAGGGCCATTGTTTTCTTGTATGACTGGTTTATGGAGCCACTAAATTCTGGATCATATCCTGTTGAAATGGTTAATAACATTGGTGAAAGATTGCCAAAATTTTCAATGGAACAGTCGTTGATGGCCAAAGGATCCTTTGATTTCTTAGGACTTAACTACTACACTGCAGCTTATGCAGCCAATGTCCCTTGCACAAGAGAAAACCAAACCATGTTCACAGATTCATGTGTGTTGCTCACATCAACAAGACATGGAGTGCGGATTGGTCCACAGGCTGCCTCAAACTGGTTATACATTTATCCTAGAGGAATTCAAGATCTTTTACTCTACACAAAGGAAAAGTTTAACAATCCAGTGATATACATAACAGAGAATGGAGTTGATGAAGTGAATGACAATGCAAAATCACTTGAGGACAATATGAGAATAGACTACATCAGTAACCATCTTGCTTATGTTCAGAGTGCCATAGAAAATGGTGTCAATGTCAAAGGCTACTTTGCATGGTCGTTGTTGGACAATTTTGAATGGGCAGATGGTTTTTCTGTTAGATTTGGAATCATTTATGTTGATTTTAAGGATGGATTGAGCAGATATCCTAAGAAATCAGCTCAGTGGTTCAAAAAGTTTCTGCATTGA 1479 0.4016 MRTASCSLIVFFILLVESVNSLNRSSFPVNFLFGVASSSYQYEGAASEGGRGPSIWDTFTHKYPYRIKDQSSGDLVVDSYHRYKEDVGIMKDIGFDAYRFSISWSRILPGGRLKGGTNREGITYYNNLINELLSNGLQPFVTLFHWDLPQALEDEYGGFLSPNIVKDFADYAEVCFREFGDRVKHWITLNEPVTFTTQGYGNGLFAPGRCSKWLPFNCSEGDSSTEPYLVTHHQILAHAATVKVYRDKYQISQKGQIGITLNSPWIMPLSQSKEDINAAFRAIVFLYDWFMEPLNSGSYPVEMVNNIGERLPKFSMEQSLMAKGSFDFLGLNYYTAAYAANVPCTRENQTMFTDSCVLLTSTRHGVRIGPQAASNWLYIYPRGIQDLLLYTKEKFNNPVIYITENGVDEVNDNAKSLEDNMRIDYISNHLAYVQSAIENGVNVKGYFAWSLLDNFEWADGFSVRFGIIYVDFKDGLSRYPKKSAQWFKKFLH* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1658 492 PANTHER BETA-GLUCOSIDASE 16 17 491 - -
Vra2g1658 492 PRINTS Glycosyl hydrolase family 1 signature 325 339 IPR001360 GO:0004553|GO:0005975
Vra2g1658 492 PRINTS Glycosyl hydrolase family 1 signature 400 408 IPR001360 GO:0004553|GO:0005975
Vra2g1658 492 PRINTS Glycosyl hydrolase family 1 signature 419 430 IPR001360 GO:0004553|GO:0005975
Vra2g1658 492 PRINTS Glycosyl hydrolase family 1 signature 440 457 IPR001360 GO:0004553|GO:0005975
Vra2g1658 492 PRINTS Glycosyl hydrolase family 1 signature 464 476 IPR001360 GO:0004553|GO:0005975
Vra2g1658 492 Gene3D Glycosidases 12 492 - -
Vra2g1658 492 Pfam Glycosyl hydrolase family 1 25 490 IPR001360 GO:0004553|GO:0005975
Vra2g1658 492 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 31 45 IPR033132 -
Vra2g1658 492 PANTHER GLYCOSYL HYDROLASE 17 491 IPR001360 GO:0004553|GO:0005975
Vra2g1658 492 SUPERFAMILY (Trans)glycosidases 12 491 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1658 Vra-Chr2 24718844 24722734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1658 1 491 Glycoside Hydrolase AT5G44640 61.277 0.0 658
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1658 - K01188 gmx:100791121 732.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1658 2 24718844 24722734 Vra2g1658 2 24718844 24722734 ECH