Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1657 ATGGCTTCTCTAACTTTTCCTTATTCGTACGTTGTTCTGCTAATTGTTCTCCTCTTTCTCTCATCTTTGTTCACTGCTACTTCTTCAAAGTGTGGTGGTTCTAGTGTGAACTTAACCTCCTCTTTAAACAGCAAAGATTCAACGACGGCATGGAATTCACCTTCTGGCCACTTTGCCTTTGGTTTCCAATCAGTTCTATACGACAATAAGGAGTTCATGTCTGTGCTTGCAGTTTGGTTTGCCAAAGACCCCAACAAAACCATGGTATGGTATGCAAAGCCAGAAAAAGAAAAAACTCATCTTTTTCCGTTAGGATCAACGGTGAATCTCACAAACAAAGGAATTGTCGTGTATGATCCAAAGGGTCATGACATGTTGTGGCAACGTCCAGAAAACAATACTGATTCTTTAGTATCATGTGCTTTTGTGCTAGACAATGGAAGTTTTGAGCTTGTGGATGAGGATGGGAAGAAGGTTTGGGAGAGCTTTGAGGAGCCCACAGATACTATTTTGCCTGGTCCAGAAAACAATACTGATTCTTTAGTATCATGTGCTTTTGTGCTAGACAATGGAAGTTTTGAGCTTGTGGATGAGGATGGGAAGAAGGTTTGGGAGAGCTTTGAGGAGCCCACAGATACTATTTTGCCTGGTCTAGGCAGAAGCTTCAGAGCACGCCAATCTGATACGAGTTTTGATGATGGGAATTTTGAACTCAGTTGGCAGGGTGATAGCAATTTGGTTCTTTACCATTCTCCAAAATCAAGCAACGATGATTCTGAAAGCTCTCAGTCTCCAACACACGACGCTTACTGGGCCACTGGAACTGTCGGAACTGATTCACAGCTTTTCTTTGATGAGTCCGGACACATGTACATAAAAAATGGCACGGGCACAGTGATCAGAGATATCACAAATGGTGGATCTGATGAGTTCTTTTACATGGCTAGAATTGACCCTGATGGGGTTTTCAGACTATATCGGCACCCAAAAGATGAGAACAAAGCTGTGGCTAATAGTTGCAGTTCAACGTGGTGGAGTGTGGAGCAAAAGCATCCAGATGATATTTGCCTTTCCTTCACGAAGCAAACTGGGAATGTTATCTGTGGTTTTAACAGCTACTGTGTTAGCAGCGGTGACAGGACTAATTGTGAGTGCCCGGAGCATTATTCTCCTTTCGAACATGACAATCTCATAGGTTGTAGACCAGATTTTCCACTGCCCAGTTGCAACAGAGACGGGTGGGAGCAGAATAAGGATCTTGTAGATTTCAACGAGTATCCCAATTTGGACTGGCCTCTCTCAGATTATGATAAGTTTGAAACTGGAATGGACAAGGATTTGTGCAGACAAAGATGCCTTGAAGATTGCTTTTGTGCTGTGGCCATATATGGTGATGGAAGCTGTTGGAAGAAGAAGTATCCAATGAGCAATGGAAGGAAGCACGCGAATGTGACTAGAATAGCTTTTGTCAAGGTCCCTAAAACAGATTTAAACAATGATGAAAAAGAACAGACTACACTTGTGATTGTCATATCAATACTCCTTGGAAGCTCAGTGTTCATCAATGTCCTTCTACTTGTTGCTTTGTTTGCTGCTTTTTTCATTTTCTACCACAAGAGGCTTTTGAGCAGTCAGAACGTGTCAGTTGGTACAGTTAGTCACTTTACCTACAAGGAGCTTGAAGAAGCAACCACAGGGTTCAAACAAATGTTGGGTGGAGGTGCTTTTGGAAAAGTTTATAAAGGGGTGTTGAGATCAAACGCAAGCAGGTATGTTGCTGTGAAGAGGCTAGACAAGGTTGTGCAGGAAGGTGAGAAAGAGTTCAAAACAGAAGTGAGTGTGATTGGACAAACCCACCACAGAAACTTGGTTCGTCTGTTTGGTTATTGTGATGAAGGGGAGCATCGTCTTTTGGTGTATGAGTACATGAGCAACGGTTCATTGGCTGGTTTTCTCTTTGGGATCTCAAGGCCTCATTGGAACCAAAGAGTGCAAATTGCTTTGGGGATTGCGAGGGGGCTCACGTATTTGCATGAAGAGTGCAGCACTCAGATAATTCACTGTGACATAAAGCCTCAGAATATACTCCTGGATGAGTTTTTCACTCCAAGGATTTCTGATTTTGGCTTGGCAAAGTTGTTGCTGGCTGAGCAAACTAAAGCTGCTAGAACTGGTTTGAGAGGGACAATTGGTTACTTTGCACCAGAATGGTTTAGGAAAGCTACAATCACAACAAAAGTAGATGTTTACAGTTTTGGAGTGGTGCTGTTAGAGATCATATGTTGCAAGTCTAGTGTTGCCTTTGCATTGGAAAGTGAAGAAGAGGCACTCATAGATTGGGCTTATAGATGTTATAGCCAAGGGAATGTAGCTAAATTGGTGGAAAATGATGAGGAGGCAAAGAATGATATGAAGAGGCTGGAGAAGCATGTCATGGTTGCAATTTGGTGCATTCAAGAGGATCCTTCACTCAGACCTTCCATGAAAAAGGTCACACAGATGCTTGAGGGTGTTACAACAGTTTCTGTGCCACCTTGTCCTTCTATCTTCATTTCATCTTCTTTCTAA 2568 0.4256 MASLTFPYSYVVLLIVLLFLSSLFTATSSKCGGSSVNLTSSLNSKDSTTAWNSPSGHFAFGFQSVLYDNKEFMSVLAVWFAKDPNKTMVWYAKPEKEKTHLFPLGSTVNLTNKGIVVYDPKGHDMLWQRPENNTDSLVSCAFVLDNGSFELVDEDGKKVWESFEEPTDTILPGPENNTDSLVSCAFVLDNGSFELVDEDGKKVWESFEEPTDTILPGLGRSFRARQSDTSFDDGNFELSWQGDSNLVLYHSPKSSNDDSESSQSPTHDAYWATGTVGTDSQLFFDESGHMYIKNGTGTVIRDITNGGSDEFFYMARIDPDGVFRLYRHPKDENKAVANSCSSTWWSVEQKHPDDICLSFTKQTGNVICGFNSYCVSSGDRTNCECPEHYSPFEHDNLIGCRPDFPLPSCNRDGWEQNKDLVDFNEYPNLDWPLSDYDKFETGMDKDLCRQRCLEDCFCAVAIYGDGSCWKKKYPMSNGRKHANVTRIAFVKVPKTDLNNDEKEQTTLVIVISILLGSSVFINVLLLVALFAAFFIFYHKRLLSSQNVSVGTVSHFTYKELEEATTGFKQMLGGGAFGKVYKGVLRSNASRYVAVKRLDKVVQEGEKEFKTEVSVIGQTHHRNLVRLFGYCDEGEHRLLVYEYMSNGSLAGFLFGISRPHWNQRVQIALGIARGLTYLHEECSTQIIHCDIKPQNILLDEFFTPRISDFGLAKLLLAEQTKAARTGLRGTIGYFAPEWFRKATITTKVDVYSFGVVLLEIICCKSSVAFALESEEEALIDWAYRCYSQGNVAKLVENDEEAKNDMKRLEKHVMVAIWCIQEDPSLRPSMKKVTQMLEGVTTVSVPPCPSIFISSSF* 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1657 855 ProSitePatterns Serine/Threonine protein kinases active-site signature. 685 697 IPR008271 GO:0004672|GO:0006468
Vra2g1657 855 Gene3D Phosphorylase Kinase; domain 1 537 642 - -
Vra2g1657 855 SUPERFAMILY alpha-D-mannose-specific plant lectins 227 329 IPR036426 -
Vra2g1657 855 SMART blect_4 33 166 IPR001480 -
Vra2g1657 855 Gene3D Transferase(Phosphotransferase) domain 1 643 843 - -
Vra2g1657 855 SUPERFAMILY alpha-D-mannose-specific plant lectins 88 174 IPR036426 -
Vra2g1657 855 SUPERFAMILY alpha-D-mannose-specific plant lectins 182 275 IPR036426 -
Vra2g1657 855 PIRSF SRK 174 854 IPR024171 GO:0004674
Vra2g1657 855 PIRSF SRK 5 185 IPR024171 GO:0004674
Vra2g1657 855 Pfam Protein tyrosine and serine/threonine kinase 567 835 IPR001245 GO:0004672|GO:0006468
Vra2g1657 855 SMART serkin_6 565 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1657 855 Coils Coil 790 810 - -
Vra2g1657 855 PANTHER - 174 854 - -
Vra2g1657 855 PANTHER - 2 174 - -
Vra2g1657 855 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 174 854 - -
Vra2g1657 855 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 2 174 - -
Vra2g1657 855 Gene3D - 218 352 IPR036426 -
Vra2g1657 855 Gene3D - 33 164 IPR036426 -
Vra2g1657 855 CDD STKc_IRAK 571 837 - -
Vra2g1657 855 SUPERFAMILY Protein kinase-like (PK-like) 547 836 IPR011009 -
Vra2g1657 855 ProSiteProfiles Protein kinase domain profile. 565 851 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1657 855 CDD PAN_AP_plant 415 493 - -
Vra2g1657 855 ProSitePatterns Protein kinases ATP-binding region signature. 571 595 IPR017441 GO:0005524
Vra2g1657 855 MobiDBLite consensus disorder prediction 249 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1657 Vra-Chr2 24714361 24717360 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1657 512 839 Receptor kinase-like Gene Family AT5G45780 40.816 1.43e-70 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vra2g1657 PK_Tyr_Ser-Thr 1.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1657 - - vra:106753716 1706.81