Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1651 ATGACGACTCGAATTGCACCTGGTGTGGGAGCCAATTTGCTCGGTCAACACGCCGCTGAGAGGAATCAAGATGCCACTGCTTATGTCGGCAATCTCGACCCTCAGATTAGCGAAGAATTATTGTGGGAGTTGTTCGTTCAAGCTGGTCCAGTGGTTAATGTCTATGTTCCGAAGGACAGAGTGACCAACCAACACCAGGGTTATGGGTTTGTTGAATTCAGGAGTGAAGAAGATGCTGACTATGCCATCAAGGTTCTTAACATGATCAAGCTTTATGGGAAACCAATCCGTGTGAATAAGGCATCCCAAGATAAAAAGAGCTTGGATGTTGGTGCAAACCTTTTCATTGGTAATCTTGATCCTGATGTAGATGAGAAGCTCTTGTACGATACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCAAAGATCATGAGAGATCCTGAGACAGGAAATTCGCGTGGTTTTGGCTTCATCAGCTATGATTCATTTGAGGCATCTGATTCTGCCATTGAGGCGATGAATGGACAATATCTTTGCAATCGTCAAATTACAGTGTCATATGCTTATAAGAAAGACACTAAGGGTGAACGGCATGGTACCCCGGCAGAAAGAGTTTTGGCTGCAAGTAATCCAACTGCACAGAAGAGCAGGCCCCATACTTTATTTGCCAGTGGACCTCCAACACTTCCCAGTGTTCCTCAGGCTAATGGGGTTGCTCCAGTGCCTCCCCGTCCCTTTGCTAATGGGGTCGCTCCTGGTTCGATTCCTGCTCTTCGTCCACCACCCCCTCAAGCTGCTGCATTCCAGCCTATGCCAGTACCTGGACAACCAACCTGGCATCCGCAACAGCCTATGCCACCTCCACCTCAAGTTCAGCAGTTCAGGCCACCACACCCTGGTATGCAGCAGATGCCACCACCTCCACAAGCTCCTCCCAGGCCTCTTCCACCACCAGCAGTAATGGGAAGTCAGCCACCACCTGTCTGGCGTCCACCACCACCACCCCAGCATCAGGGCGGACGGCCTATGCCATACCCTCAGTCTATGCCCCCGCCACCACCTCCCCAGTAA 1074 0.5009 MTTRIAPGVGANLLGQHAAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPTLPSVPQANGVAPVPPRPFANGVAPGSIPALRPPPPQAAAFQPMPVPGQPTWHPQQPMPPPPQVQQFRPPHPGMQQMPPPPQAPPRPLPPPAVMGSQPPPVWRPPPPPQHQGGRPMPYPQSMPPPPPPQ* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1651 357 Gene3D - 107 204 IPR012677 -
Vra2g1651 357 CDD RRM2_SF3B4 111 193 IPR034159 -
Vra2g1651 357 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Vra2g1651 357 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Vra2g1651 357 CDD RRM1_SF3B4 28 100 IPR034158 -
Vra2g1651 357 Gene3D - 16 106 IPR012677 -
Vra2g1651 357 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Vra2g1651 357 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Vra2g1651 357 MobiDBLite consensus disorder prediction 208 232 - -
Vra2g1651 357 SUPERFAMILY RNA-binding domain, RBD 25 195 IPR035979 GO:0003676
Vra2g1651 357 PANTHER SPLICING FACTOR 3B SUBUNIT 4 1 349 - -
Vra2g1651 357 MobiDBLite consensus disorder prediction 237 357 - -
Vra2g1651 357 PANTHER TRANSFORMER-2-RELATED 1 349 - -
Vra2g1651 357 SMART rrm1_1 26 99 IPR000504 GO:0003723
Vra2g1651 357 SMART rrm1_1 113 187 IPR000504 GO:0003723
Vra2g1651 357 MobiDBLite consensus disorder prediction 193 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1651 Vra-Chr2 24642719 24647342 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1651 16 98 Eukaryotic Initiation Factors Gene Family AT4G34110 37.349 1.84e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1651 K12831 - gmx:100791039 563.918