Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1647 ATGGAGGCGGAGCCCGAGTCTGGGCCCGGGCCTGAGTTTAATTCGAAGGAGGAAGCTTTCGCATTCTACCAAGCCCACGCGAAATCTGTGGGTTTCTCTGCCATAATCAAAGCCAGCCGCCGATCCCGAATCTCCGGCAACTTCATCGACGCCAAATTCGCCTGCACTCGCTACGGCGCCCCACCAAGCCACAAGCCCAAACGGGCCCCTTCCCGGGCCAAAACCGATTGCAAAGCCTCCATGCACGTGAAACGAACACCCCACGGTACATGGATCATCTCTTCTTTCATCAAACACCATAACCACCAAATTTCCCCCATTCACAGTAGCCCTAATCCCAATAATAATGTTAACAACAAGGCAAGTCCCTCAAGGAAACTCAAGGTTAAAAAAATACCGCAATACTTAACTTTCGCCCAAGGTGACCTTCAATTTTTGCTCAACGCTTTCATGTCTATGCAAAATGAAAACCCTAATTTCTTTTTCGCGGTTGATCTTAACGAGGAGCAGCGGTTGAGGAGTGTTTTCTGGGTGGACGCTAAGGCTAGGCTTGATTATAGACATTTTAGTGATGTGGTGCTTTTGGACACCACTCACGTTAAAAACGAGTGTAGATTGCCCTTTGTTCCGTTTGTTGGTGTGAACCACCATCTTCAGTTCTTGTTGCTGGGATTGGCCTTTGTGTCTGATGGGTCTGAATCCACGTATGCGTGGCTGATGAGGAATTGGTTGAGGGCAATGGGAGGACTTGCTCCTAAGGTGATGCTCACTGACCGTGATGAAGTGCTGAAGAGAGCGGTTGCTCAAGTGGTTCCTGAGTCTTGTCATTGCTTTTGTCTGTGGCATGTGTTGGGTAAGGTTCCAGAGAAACTCGGTCGCCGTATTCATGGGCACGGTGGGGAGTTTATGAGTGGATTGAGTGAGTGTGTTTTGAGGTCTAGGACAAAGGAGCAGTTTGAGAAGAGGTGGGGGGAGATGGTTGAGAGGTTTGACATGGGTGATGAGAGTTGGTTGTGTGAGATTTATGAGGATCGGAAACAGTGGGTACCTGCGTTTATGAATGGCAGGGTTTTAGCAGGAATGTCGACTGTGCAGAGATCAGAAGCCATGAACTGCCTGTTTGATAAATATGTGCAGAGGAAAACTACTATGAAAGAATTTCTGGAGCAGTACAGAGTGGTGTCGAGGGGTAAGTGTGAGGAGGAAGCCAAGGCTGATTTTGAAACTCTGCGTAGACAGCCAGCGTTGAAGTCCCCATCACCTTTTGGGAAGCAAATGGTGGAGTTGTACACCAATGCAGTGTTTAAGAAGTTCCAGGGTGAGGTTTTGGGAGCTGTTGCTTGTCATCCAAGGAAAGAGAGCGAAGATGGGGCAATGAAAATGTTTAAGGTTCAGGATTTCGAGGACAATCAAGATTTTGTTGTGACGTGGAATGAATCGACTTCAGAAGCATCATGCTCTTGCTATTCATTTGAGTTTAATGGCTATCTTTGTAGGCATGTAATGATTGTGCTACAGATTTCTGGTGTACATAGCATCCCACCTCGGTATATATTAAAACGCTGGACAAAAGATGCCAAGAAAAGAGATCTGTCTGTGGCAGATGTCGTTGTCTCTGACTCTAGGGCTGAGCGCTATAATAATTTATGTCAACGAGCTTTTGAGTTGGGTGATGAAGGGTCTTTATCATACGAGACTTACATTGCTTCTGTAAAGGCGTTGGAAGAAGCTTTGAGAAAGTGTGAGAACCTGGATGGTTCAATTCAGAGAGTCAGAGAACCGAACCTTCCATGTTTTGGTTCTCAAGAGGTAAGCCCTGAACCAGAGATCATTGCTATGGGAGTCGATTCTAGCTGGCTGCAAATGGAAAACCCCAATGCACAAGCAGCTGGCCTTCCTTGTTCATATAAATCACAGCAGAGCATTCAAAAGATGGATCGACTGAACTCCAGGGCTCAGAATGTGGATGGCTATTTTTCTACTCAGCGGATTGATTTTGGAATGTGCCACCAATTGAATTCTGTAGCTGCTATTCGTAATGATTATTATTGCAACCAGCATGGCATCCAAGACCGGGGACAGTTGAACTCAATTGCATCCATCCATGATCCCTGTTACATGGCCCCACAAAGGATGCAACCGATGGGTCAAGCCGATGGAGGGTCATCCTCACAGCCGCATGGGATGGAGGTAAAGGTGAAACAGCTAAATTCAAGGCACCAGTCTCAGTGA 2232 0.4686 MEAEPESGPGPEFNSKEEAFAFYQAHAKSVGFSAIIKASRRSRISGNFIDAKFACTRYGAPPSHKPKRAPSRAKTDCKASMHVKRTPHGTWIISSFIKHHNHQISPIHSSPNPNNNVNNKASPSRKLKVKKIPQYLTFAQGDLQFLLNAFMSMQNENPNFFFAVDLNEEQRLRSVFWVDAKARLDYRHFSDVVLLDTTHVKNECRLPFVPFVGVNHHLQFLLLGLAFVSDGSESTYAWLMRNWLRAMGGLAPKVMLTDRDEVLKRAVAQVVPESCHCFCLWHVLGKVPEKLGRRIHGHGGEFMSGLSECVLRSRTKEQFEKRWGEMVERFDMGDESWLCEIYEDRKQWVPAFMNGRVLAGMSTVQRSEAMNCLFDKYVQRKTTMKEFLEQYRVVSRGKCEEEAKADFETLRRQPALKSPSPFGKQMVELYTNAVFKKFQGEVLGAVACHPRKESEDGAMKMFKVQDFEDNQDFVVTWNESTSEASCSCYSFEFNGYLCRHVMIVLQISGVHSIPPRYILKRWTKDAKKRDLSVADVVVSDSRAERYNNLCQRAFELGDEGSLSYETYIASVKALEEALRKCENLDGSIQRVREPNLPCFGSQEVSPEPEIIAMGVDSSWLQMENPNAQAAGLPCSYKSQQSIQKMDRLNSRAQNVDGYFSTQRIDFGMCHQLNSVAAIRNDYYCNQHGIQDRGQLNSIASIHDPCYMAPQRMQPMGQADGGSSSQPHGMEVKVKQLNSRHQSQ* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1647 743 Coils Coil 564 584 - -
Vra2g1647 743 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 9 664 IPR031052 GO:0006355
Vra2g1647 743 SMART 26again6 484 511 IPR006564 GO:0008270
Vra2g1647 743 Pfam FAR1 DNA-binding domain 22 105 IPR004330 -
Vra2g1647 743 MobiDBLite consensus disorder prediction 710 743 - -
Vra2g1647 743 Pfam MULE transposase domain 192 284 IPR018289 -
Vra2g1647 743 ProSiteProfiles Zinc finger SWIM-type profile. 473 509 IPR007527 GO:0008270
Vra2g1647 743 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 9 664 - -
Vra2g1647 743 MobiDBLite consensus disorder prediction 716 743 - -
Vra2g1647 743 MobiDBLite consensus disorder prediction 60 80 - -
Vra2g1647 743 Pfam SWIM zinc finger 473 505 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1647 Vra-Chr2 24624327 24630436 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vra2g1647 MULE 1.5e-23 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1647 - - gmx:100792626 1018.84