Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1644 ATGGAAATACTGTTGGAGAGAGGGTGCGTGAAGAAGCCACGGTGGAGTAGAGAAGAAGATGAAGTTCTTCGGGATCATGTCAAAGAGAATGGTGCAAGAAACTGGAGCATTGTATCCAAAAGATTGTGCCAACGAACAGGAAAATCTTGTCGCCATAGATGGTTTAACAAACTTAAGCCAAACTTGAAGACTGGAAAGTTTTCGGCAGAAGAAGAGAAATCGGTGATAGAAAAGCAGAAACAGTTTGGGAACAAATGGGCCACAATTGCAAAGGATTTGCCGGGGAGAACGGACAATGATGTGAAAAACTTTTGGAGCAGTCGGAGAAAAAGGTTAGAGAGGATGTTGCAGAAAAGCAAGGGAAAAACTCCTCTTACTCAAGTGCTAGCGGAGAAGGCTCCTCCATGCAGTTCAAACAGTCAACAGATGGAAAATGATTTCATGAATGCAGTTGAGGTTGAGGCCACCCGACTTCACACAATACCATCTTTTGAGTCTTCATTAGGGTACAACTTCCCTCTGCTCCCTGAGCCACTAATCGACTTTCCAGTCTTCCCAGAGTACCGGGACCTTGTTCTAGAGACCTTTGATCTAAATTTTATTGATGGATTCGTCGAGAACATTTGTCAATACTTTGAGTAG 642 0.4346 MEILLERGCVKKPRWSREEDEVLRDHVKENGARNWSIVSKRLCQRTGKSCRHRWFNKLKPNLKTGKFSAEEEKSVIEKQKQFGNKWATIAKDLPGRTDNDVKNFWSSRRKRLERMLQKSKGKTPLTQVLAEKAPPCSSNSQQMENDFMNAVEVEATRLHTIPSFESSLGYNFPLLPEPLIDFPVFPEYRDLVLETFDLNFIDGFVENICQYFE* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1644 213 CDD SANT 14 58 IPR001005 -
Vra2g1644 213 PANTHER MYB TRANSCRIPTION FACTOR 1 142 - -
Vra2g1644 213 PANTHER MYB TRANSCRIPTION FACTOR 138 208 - -
Vra2g1644 213 SUPERFAMILY Homeodomain-like 11 105 IPR009057 -
Vra2g1644 213 CDD SANT 66 105 IPR001005 -
Vra2g1644 213 Gene3D - 12 63 - -
Vra2g1644 213 SMART sant 63 111 IPR001005 -
Vra2g1644 213 SMART sant 11 60 IPR001005 -
Vra2g1644 213 Gene3D - 65 134 - -
Vra2g1644 213 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Vra2g1644 213 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 113 IPR017930 -
Vra2g1644 213 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Vra2g1644 213 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Vra2g1644 213 Pfam Myb-like DNA-binding domain 15 74 - -
Vra2g1644 213 PANTHER TRANSCRIPTION FACTOR DUO1 1 142 - -
Vra2g1644 213 PANTHER TRANSCRIPTION FACTOR DUO1 138 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1644 Vra-Chr2 24610805 24612845 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1644 10 117 MYB Transcription Factor Family AT3G60460 70.000 7.81e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra2g1644 Myb_DNA-bind_6 5.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1644 K09422 - gmx:100793689 251.136