Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1643 ATGTGTAGTGGATGCAAGTTTTCGGCAGAAGAAGAGAGATTGGTGATAGAAATGCAGACACAGTTTGGGAACAAATGGGCCAAAATTGCAACGTATTTGCCGGGAAGAACGGACAATGATGTGAAAAACTTTTGGAGCAGTCGGAGAAAAAGGTTGGAGAGGATGTTGCAGAAGCCACCAACGTTAAAGTTGCAGAAAAGCAAGGGAAAAACTCCTCTTACTCAAGTGCTAGCGGATAAGGCTCCTCCATGCAGTTCAAACCAGGTGGAGGAAAACCTTTGTTACACTACTTCCTACATGGGAAACACCGAGGTGTTCGAGATGATCAACCTTCAAGATTTGGTAAAGCCAAACTATCAGATGGAAAATGATTACTTGAGTGCAGTTGAGGTTGAGGCCAACCCACTTCACACAGTACCATCGTTTGAGTCTTCATCAGGGAACAACTTCCCTGTGCTCCCTGAGCCACTAATCGACTTTCCACTCTTCCCAGAATGCCAGGACCTTGTTCCAGAGACCTTTGATCCAAATTTTATTGATGGGTTCGACGAGAAGAAATATTCAGAATTTGTATTCAGCCAGAAGCTTGGGACCGGGTTGCCAACTCTTGGATTGGAGGAAAATTACCAAATTACAACTTCAAACGTCTTATTCAAGGACTTCCCAAGTGAGATTTTTGAATACTTTGAGCAGATTCCAACCTCAACAAAGCAATGA 717 0.4351 MCSGCKFSAEEERLVIEMQTQFGNKWAKIATYLPGRTDNDVKNFWSSRRKRLERMLQKPPTLKLQKSKGKTPLTQVLADKAPPCSSNQVEENLCYTTSYMGNTEVFEMINLQDLVKPNYQMENDYLSAVEVEANPLHTVPSFESSSGNNFPVLPEPLIDFPLFPECQDLVPETFDPNFIDGFDEKKYSEFVFSQKLGTGLPTLGLEENYQITTSNVLFKDFPSEIFEYFEQIPTSTKQ* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1643 238 CDD SANT 6 45 IPR001005 -
Vra2g1643 238 ProSiteProfiles Myb-like domain profile. 6 49 IPR001005 -
Vra2g1643 238 PANTHER MYB TRANSCRIPTION FACTOR 2 237 - -
Vra2g1643 238 Gene3D - 6 75 - -
Vra2g1643 238 SMART sant 3 51 IPR001005 -
Vra2g1643 238 SUPERFAMILY Homeodomain-like 6 53 IPR009057 -
Vra2g1643 238 PANTHER TRANSCRIPTION FACTOR DUO1 2 237 - -
Vra2g1643 238 Pfam Myb-like DNA-binding domain 6 46 IPR001005 -
Vra2g1643 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1643 Vra-Chr2 24601326 24602363 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1643 1 234 MYB Transcription Factor Family AT3G60460 33.597 3.33e-27 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vra2g1643 Myb_DNA-binding 3.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1643 K09422 - gmx:100793689 352.443