Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1642 ATGTCTGAAGGCTATTCCTGCGGCTGCTCCGATTCCGACTCTTCTTGCGGCTGTTGGTCCACCGCCGCCAGTGCCACCGCCACCGCCACTGCCGCAACCAGATCTGAGGCTTCAACCGAACTCAGACTCTACAGAGCCTTCATCTTCTGTGTCCCCATCTTCTTCACTCTCATTCTCCTCTTTCTCTTCTACCTCTTTTACCTCCGACCGCGAACCAGGCTCCATTGGATCACCAACTTTGGTCTTCCCAACGACCACAACCACAATGCCATATCCACGGCTGAATTGGGCTTGAACAAGGAACTCAGAGAGATGTTGCCCATTATTGTCTACAAGGAAAGCTTCTCTGTCAAAGACACCCAATGTTCAGTATGCCTTATCGACTACCAGCCAGAGGATAGGCTTCAACAGATACCTGCATGTCGCCACACATTTCATATGAGCTGCATTGATCTTTGGCTTACCACCCACACCACCTGCCCTCTCTGCCGCTTCTCCTTACTAACCATAGCTAAATCTTCCACACATACATCTGATATGCAGTCACAGTCACAGAACAATGAAGAAGCACAAACCGTGGAATTATCTGAATCAAGATCTACTATGCATACAGAAACCACTGTCCTCCGAAATGTCTCTGGAGAAGTTGCAATCAGCGCTCCCTGCATTGATGTTGAAAGGCAAAATGAGTAA 693 0.4877 MSEGYSCGCSDSDSSCGCWSTAASATATATAATRSEASTELRLYRAFIFCVPIFFTLILLFLFYLFYLRPRTRLHWITNFGLPNDHNHNAISTAELGLNKELREMLPIIVYKESFSVKDTQCSVCLIDYQPEDRLQQIPACRHTFHMSCIDLWLTTHTTCPLCRFSLLTIAKSSTHTSDMQSQSQNNEEAQTVELSESRSTMHTETTVLRNVSGEVAISAPCIDVERQNE* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1642 230 SMART ring_2 122 163 IPR001841 -
Vra2g1642 230 CDD RING-H2_EL5_like 121 164 - -
Vra2g1642 230 MobiDBLite consensus disorder prediction 176 203 - -
Vra2g1642 230 Pfam Ring finger domain 121 164 IPR001841 -
Vra2g1642 230 PANTHER RING-H2 FINGER PROTEIN ATL7-LIKE 25 187 - -
Vra2g1642 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 171 IPR013083 -
Vra2g1642 230 SUPERFAMILY RING/U-box 106 170 - -
Vra2g1642 230 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Vra2g1642 230 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 25 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1642 Vra-Chr2 24595398 24598224 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1642 31 168 C3H Transcription Factor Family AT4G10150 58.741 1.39e-57 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1642 K19039 - gmx:100794211 301.982