Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra2g1642 | ATGTCTGAAGGCTATTCCTGCGGCTGCTCCGATTCCGACTCTTCTTGCGGCTGTTGGTCCACCGCCGCCAGTGCCACCGCCACCGCCACTGCCGCAACCAGATCTGAGGCTTCAACCGAACTCAGACTCTACAGAGCCTTCATCTTCTGTGTCCCCATCTTCTTCACTCTCATTCTCCTCTTTCTCTTCTACCTCTTTTACCTCCGACCGCGAACCAGGCTCCATTGGATCACCAACTTTGGTCTTCCCAACGACCACAACCACAATGCCATATCCACGGCTGAATTGGGCTTGAACAAGGAACTCAGAGAGATGTTGCCCATTATTGTCTACAAGGAAAGCTTCTCTGTCAAAGACACCCAATGTTCAGTATGCCTTATCGACTACCAGCCAGAGGATAGGCTTCAACAGATACCTGCATGTCGCCACACATTTCATATGAGCTGCATTGATCTTTGGCTTACCACCCACACCACCTGCCCTCTCTGCCGCTTCTCCTTACTAACCATAGCTAAATCTTCCACACATACATCTGATATGCAGTCACAGTCACAGAACAATGAAGAAGCACAAACCGTGGAATTATCTGAATCAAGATCTACTATGCATACAGAAACCACTGTCCTCCGAAATGTCTCTGGAGAAGTTGCAATCAGCGCTCCCTGCATTGATGTTGAAAGGCAAAATGAGTAA | 693 | 0.4877 | MSEGYSCGCSDSDSSCGCWSTAASATATATAATRSEASTELRLYRAFIFCVPIFFTLILLFLFYLFYLRPRTRLHWITNFGLPNDHNHNAISTAELGLNKELREMLPIIVYKESFSVKDTQCSVCLIDYQPEDRLQQIPACRHTFHMSCIDLWLTTHTTCPLCRFSLLTIAKSSTHTSDMQSQSQNNEEAQTVELSESRSTMHTETTVLRNVSGEVAISAPCIDVERQNE* | 231 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra2g1642 | 230 | SMART | ring_2 | 122 | 163 | IPR001841 | - | |
Vra2g1642 | 230 | CDD | RING-H2_EL5_like | 121 | 164 | - | - | |
Vra2g1642 | 230 | MobiDBLite | consensus disorder prediction | 176 | 203 | - | - | |
Vra2g1642 | 230 | Pfam | Ring finger domain | 121 | 164 | IPR001841 | - | |
Vra2g1642 | 230 | PANTHER | RING-H2 FINGER PROTEIN ATL7-LIKE | 25 | 187 | - | - | |
Vra2g1642 | 230 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 83 | 171 | IPR013083 | - | |
Vra2g1642 | 230 | SUPERFAMILY | RING/U-box | 106 | 170 | - | - | |
Vra2g1642 | 230 | ProSiteProfiles | Zinc finger RING-type profile. | 122 | 164 | IPR001841 | - | |
Vra2g1642 | 230 | PANTHER | RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING | 25 | 187 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra2g1642 | Vra-Chr2 | 24595398 | 24598224 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra2g1642 | 31 | 168 | C3H Transcription Factor Family | AT4G10150 | 58.741 | 1.39e-57 | 181 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra2g1642 | K19039 | - | gmx:100794211 | 301.982 |