Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1630 ATGGAATCCTGCAATTGTATTGACCCACAAATGGCAGCTGATGACTTATTGGTGAAATACCAATATATGTCTGATTTCTTCATTGCCCTTGCTTATTTCTCAATCCCTTTGGAGCTTATCTACTTTGTTAAGAAATCAGCTGTATTTCCATATAGATGGGTCCTTGTTCAGTTTGGTGCTTTCATAGTTCTATGTGGAGCAACACATCTAATTAATTTATGGACCTTTAGAATTCATTCAAGAACTGTGGCCATTGTAATGACCACTGCTAAGGTTTTAACNGCTGTGGTATCGTGTGCAACTGCCCTCATGCTTGTACATATTATTCCTGATTTATTAAGTGTTAAAACAAGGGANTTATTTTTGAAGAACAAGGCTGCCGAGCTTGATAGAGAAATGGGCCTGATTCGCACACAAGAAGAAACTGGTCGACATGTTAGGATGCTAACTCATGAGATTAGAAGCACTCTTGATAGACACACAATATTGAAAACGACTCTTGTTGAGTTGGGTAGAACTTTGGCACTAGAGGAATGTGCCTTATGGATGCCAACTCGAACTGGGTTAGAGCTTCAGCTCTCTTACACACTGCGACAGCAGAACCCAGTTGGATACACGGTACCCATTCATCTTCCTGTGATCAATCAAGTATTTAGTAGCAACAGGGCAGTAAAAATTTCACATAATTGTCCTGTTGCTAGATTACGACCTTATGCTGGAAAATACATGCCTGGGGCAGTTGTAGCTGTTCGAGTTCCTCTCCTACATCTTTCTAATTTCCAAATATATGATTGGCCTGAGGTTTCNACTAGAAATTATGCTTTGATGGTTTTGATGCTTCCATCAGATAGTGCTAGACAATGGCATGTGCATGAGTTAGAATTGGTTGAGGTAGTTGCTGACCAGGTAGCTGTNGCACTTTCACATGCTGNAATCCTGGAAGAGTCAATGAGGGCAAGGGATCAACTCATGGANCAGAATGTTGCACTGGATCTGGCAAGAAGAGAAGCAGAAACTGCAATTCGTGCTCGGAATGACTTTTTAGCTGTTATGAACCACGAGATGAGAACTCCCATGCATGCAGTTATTGCACTCTCTTCATTACTACAGGAAACAGATTTGACAGCAGAGCAACGTCTAATGGTGGAGACAATATTGAAAAGCAGTAATTTGTTGGCTACCCTCATCAATGATGTTTTGGATCTTTCACGGCTTGAAGATGGCAGTCTTCAACTTGAAGAAGCAACATTTAACCTTCATTCTTTGTTCAGAGAGGTCCTTAACTTGATTAAGCCTGTTGCATCTGTTAAAAAGTTATCACTCACTTCACATTTAGCTTCAGATTTGCCAATGTATGCCATTGGTGATGAAAAACGTCTCATGCAAACTATTCTGAATGTTGTTGGTAATGCTGTTAAGTTCTCAAAAGAGGGCTGCATTTCCATAACTGCTTTCATTGCAAAGCCTGAATNCTTTAGGGATCCTAGAATTCCTGACTTTCTTCCAGTGCCAAGTGATAGCCACTTTTATTTGCGAGTACAGGTAAAAGATTCAGGATCAGGAATCAATCCACAGGACATCCCAAAGTTATTCACCAAGTTTGCACAAAACCAATCTTTAGCAACAAGAAATCCTGCCGGAAGTGGACTTGGCCTGGCAATTTGTAGGAGGTTTGTAAATCTTATGGAAGGGCATATTTGGATTGAAAGTGAAGGTATTGGTAAAGGATGTACAGCCACGTTTATTGTAAAACTTGGAATCCCAGACCGATCAAATGAACTTAAGCTACCTTTTGTACCTAAAGTTCCGGGAAATCATGTTCATGGACGTACAAACTTTGCTGGGCTCAAGGTTCTTGTCATGGATGACAATGGGGTTAGCAGGACAGTAACAAAGGGACTTCTTATGCATTTAGGATGCGATGTAACCACTGCAAGCTCGAGTGAAGAATGTCTTCGTGTTGTTTCTCTGGAACATGAAGTGGTCTTCATGGATGTTTGTACAGGGTTAGATGGGTATGAACTAGCAGTACGTATACATGAGAAGTTTACGAAACATCAAGATAGACCACTGATAGTTGCTCTAACTGGAAACACCAAAAGGGTAACAAAAGAGAACTGTATGAGGGTTGGAATGGATGGCCTTATATTAAAACCTATTTCTGTTGACAAAATGAGGGGTGTTTTATCAGAACTCTTGGANCGCCGAGTTCTATTTGAAACTGTTTAA 2229 0.4038 MESCNCIDPQMAADDLLVKYQYMSDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFRIHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRXLFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIHLPVINQVFSSNRAVKISHNCPVARLRPYAGKYMPGAVVAVRVPLLHLSNFQIYDWPEVSTRNYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAXILEESMRARDQLMXQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAVIALSSLLQETDLTAEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLEEATFNLHSLFREVLNLIKPVASVKKLSLTSHLASDLPMYAIGDEKRLMQTILNVVGNAVKFSKEGCISITAFIAKPEXFRDPRIPDFLPVPSDSHFYLRVQVKDSGSGINPQDIPKLFTKFAQNQSLATRNPAGSGLGLAICRRFVNLMEGHIWIESEGIGKGCTATFIVKLGIPDRSNELKLPFVPKVPGNHVHGRTNFAGLKVLVMDDNGVSRTVTKGLLMHLGCDVTTASSSEECLRVVSLEHEVVFMDVCTGLDGYELAVRIHEKFTKHQDRPLIVALTGNTKRVTKENCMRVGMDGLILKPISVDKMRGVLSELLXRRVLFETV* 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1630 742 ProSiteProfiles Response regulatory domain profile. 617 733 IPR001789 GO:0000160
Vra2g1630 742 Gene3D - 136 308 IPR029016 -
Vra2g1630 742 CDD REC_ETR-like 616 729 - -
Vra2g1630 742 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 397 585 IPR036890 -
Vra2g1630 742 Gene3D - 408 592 IPR036890 -
Vra2g1630 742 PRINTS Bacterial sensor protein C-terminal signature 511 525 IPR004358 GO:0016310|GO:0016772
Vra2g1630 742 PRINTS Bacterial sensor protein C-terminal signature 529 539 IPR004358 GO:0016310|GO:0016772
Vra2g1630 742 PRINTS Bacterial sensor protein C-terminal signature 546 564 IPR004358 GO:0016310|GO:0016772
Vra2g1630 742 SMART REC_2 616 729 IPR001789 GO:0000160
Vra2g1630 742 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 328 409 IPR036097 GO:0000155|GO:0007165
Vra2g1630 742 Gene3D - 309 407 - -
Vra2g1630 742 PIRSF Ethylen_sen_hybr_HK 1 740 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Vra2g1630 742 SMART HKATPase_4 455 587 IPR003594 -
Vra2g1630 742 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 455 585 IPR003594 -
Vra2g1630 742 SMART gaf_1 158 317 IPR003018 GO:0005515
Vra2g1630 742 SMART HisKA_10 343 408 IPR003661 GO:0000155|GO:0007165
Vra2g1630 742 Pfam GAF domain 158 307 IPR003018 GO:0005515
Vra2g1630 742 CDD HisKA 341 404 IPR003661 GO:0000155|GO:0007165
Vra2g1630 742 ProSiteProfiles Histidine kinase domain profile. 350 589 IPR005467 -
Vra2g1630 742 Pfam His Kinase A (phospho-acceptor) domain 344 408 IPR003661 GO:0000155|GO:0007165
Vra2g1630 742 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 2 738 - -
Vra2g1630 742 SUPERFAMILY GAF domain-like 158 319 - -
Vra2g1630 742 Gene3D - 610 742 - -
Vra2g1630 742 SUPERFAMILY CheY-like 612 734 IPR011006 -
Vra2g1630 742 Pfam Response regulator receiver domain 618 726 IPR001789 GO:0000160
Vra2g1630 742 PANTHER ETHYLENE RECEPTOR 1-LIKE 2 738 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1630 Vra-Chr2 24449047 24457030 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1630 1 740 Miscellaneous Gene Families AT1G66340 81.267 0.0 1225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra2g1630 GAF 2.6e-15 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1630 K14509 - gmx:100795340 1383.24