Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1620 ATGGAAGCTAGTACAGGTCTTTTTGCTGGTACTCCAAACAGCAAAGAGCTTGTGGCCATTCAAGGACACGATGAGCCTAAGCCGGTGAAGAACTTAGATGGTCAGCTCTGTGAGATATGTGGTGATTCTGTGGGAGTTACAGTTGAAGGAGACTTGTTTGTAGCTTGTGAAGAGTGTGGTTTCCCTGTGTGCAGGCCATGCTATGAGTATGAGAGAAGGGAAGGGACTCAAGTTTGTCCTCAGTGTCATACAAGATACAAGCGCATCAAAGGAAGTCCAAGAGTGGAGGGAGATGAGGATGAAGACGATGTGGATGACATTGAACATGAATTCAAGCACGAAGAGATGCAAAAGGGAAACATGATCCATGGAGATGATGATGGGAATTCTAAATCGGGTTTAGCAAAGGTGAATGGGGAGCTGCTTTCTACAAGTGCGGGAGAACCTGCAGGTGCAAAGTTGGATGACAAGGAGAACATAGATGAGTGGATGTTGCGCCAAGGGAATCTGTGGCCTGAAACTGATGCCTCAGTTGATCAGGAAAAGGCCATGAAAGAGCCATTGTCAAGGAAAGTAGCAATACCATCAGGCAAACTCAGTCCTTACAGAATGATGGTTGTGGCTAGATTCCTCCTTCTATTACTTTTCTTCCAGTACAGAATCTTCCACCCAGTACCTGATGCAGTTGGACTATGGTTCATATCTGTAACGTGTGAAATCTGGCTTGCATTATCCTGGATGATTGATCAGATTCCCAAATGGTTCCCCATTGATCGCGAGACATATCTTGATCGTCTTTCAATCAGGTTTGAACAAGAGAACAAGCCGAATATGCTTTCTCCAATAGATATCATTGTCACTACTGTGGATCCAATCAAGGAACCTCCTCTTGTGACAGCCAACACTGTTCTTTCAATCTTGGCCCTGGATTACCCTGCTGACAAAATCTCATGCTATGTTTCTGATGACGGAGCTTCCATGCTCACCTTTGAAGCTCTTCAAGAAACTGCTGAGTTTTCCAGAAAGTGGGTTCCTTTCTGCAAAAAGTTCTCTATAGAACCCAGAGCACCAGAAAAGTACTTCTCTGAGAAAATAGATTTTCTAAAGGATAAGCTTCAATCCACTTACGTAAAAGAACGGCGTACTATGAAGAGAGAATACGAAGAATTTAAAGTGAGAATAAATGCATTGGTGGCTAAATCTATGAGAGTTCCCCCAGAAGGGTGGACTCTGAAAGATGAGACACCATGGCCAGGAAACAACCCCAAAGATCATCCAAGCATGATACAGGTTCTTCTTCCACACAATGTTGGTAATGAACTTCCTTGTCTTGTCTACACATCTCGTGAGAAAAGGCCTGCATTTCAACACCACGGCAAAGCTGGTGCAATCAACGCCTTGCTTCGAGTATCAGCAGTGTTAAGCAATGCTCCTTTTGTGCTCAACTTGGATTGCAATCACTACGTAAATAACAGCAAAGTCGTGCGAGAGGCCATGTGTTTCTTTATGGACATACAACTTGGGAATGGCATTGGCTTTGTACAGTTTCCACTAAGATTTGACAGCCTAGATAGGCATGATCGTTATGCCAATAAAAACACTGTTTTATTTGATATTAACTTGAGGTGCCTAGATGGAATTCAGGGACCTGCTTATGTTGGTTCAGCATGTATCTTCAGAAGGAAATCCTTAACTGGCAGTGACTCACCAGTGTCTTCAAAACGCCCAAGCATGGTGCAAGTACACTCAAAACAGGATGAGAATGGAGAAGAAGCTAGCATAACAGCAGCAACAGATGAGGAAAAAGAACTATTGAAGTCACAGATGAATGATGAAAATAAATTTGGGAAGTCCACACCTATCATGAACTCTTCATTAACTGAAGAAGGTGGTATTGATCCTTCTTCCAGTCAGGAAGTCTTGCTTAAAGAAGCTATTCATGTCATGGGTTCTAAATATGAAGACAGAACTCTCTGGGGATATGAGGTGGGTTTAAGTTATGGATCTATAGCAGCAGATACTCTGACAAGTTTGAAGATGCATTGTCATGGTTGGAGGTCTGTATATTGCATGCCCAAAAGAGATCCATTCAGGGGTACAGCTCCTATCAACCTCACAGATAGACTCAACCAGGTGCTGAGATGGGCAGTGGGATCACTTCAGATCCTATTCAGCCACCATTGCCCTCTTCTGTATGGCCTCAGTGGTGGAAGACTCAAGGGACTCCAAAGGATTGCCTATATTAACAGCACTGTCTACCCCTTCAGCTCAATACCCCTCCTAATATACTGTATCGTTCCTGCTATATGCTTGCTCACTGATAAATTCATCACACCATCGGTTGGCACCTTTGCAAGTCTAGTTTTCACCGCATTGTTCATCTCAATCTTTGCCTCGGCGATTCTTGAATTGAGATGGAGTGGAGTTAGCCTGGAGGAATGGTGGAGAAGCCAGCAATTCTGGGTGATTGGGAGTGTGTCTGCAAACCTCTTTGCCGTTGTGCAGAGCATTATGGGAGCTCTTCCACTGGGTAGAGTGAACACAAACTTCAGCATTGTATCAAAGGCTCCAGATGATGTAGAGTTTCGTGAACTGTACACCATTAGATGGACTGCACTTCTAATACCTCCAACCACCATCATAATAATCAACCTCATTGGTATAGTGGCTGGCTTCACAGATTCCATAAACAGTGGAGAACATTCTTGGGGAGCACTGCTTGGGAAACTCTTCTTTTCTTTATGGGTTATTGTCCATTTGTATCCTTTCCTTAAAGGTCTAATGGGTAGGCAGAACAGAACACCAACTCTTATTGTCATATGGTCTGTGCTCTTGGCTTCTATCTTCTCCTTAGTTTGGGTGAGAGTTGACCCTTTTGTGTTGAAAACCAAGGGACCTGATGTCAAGCAATGTGGAATCAGTTGCTGA 2928 0.4365 MEASTGLFAGTPNSKELVAIQGHDEPKPVKNLDGQLCEICGDSVGVTVEGDLFVACEECGFPVCRPCYEYERREGTQVCPQCHTRYKRIKGSPRVEGDEDEDDVDDIEHEFKHEEMQKGNMIHGDDDGNSKSGLAKVNGELLSTSAGEPAGAKLDDKENIDEWMLRQGNLWPETDASVDQEKAMKEPLSRKVAIPSGKLSPYRMMVVARFLLLLLFFQYRIFHPVPDAVGLWFISVTCEIWLALSWMIDQIPKWFPIDRETYLDRLSIRFEQENKPNMLSPIDIIVTTVDPIKEPPLVTANTVLSILALDYPADKISCYVSDDGASMLTFEALQETAEFSRKWVPFCKKFSIEPRAPEKYFSEKIDFLKDKLQSTYVKERRTMKREYEEFKVRINALVAKSMRVPPEGWTLKDETPWPGNNPKDHPSMIQVLLPHNVGNELPCLVYTSREKRPAFQHHGKAGAINALLRVSAVLSNAPFVLNLDCNHYVNNSKVVREAMCFFMDIQLGNGIGFVQFPLRFDSLDRHDRYANKNTVLFDINLRCLDGIQGPAYVGSACIFRRKSLTGSDSPVSSKRPSMVQVHSKQDENGEEASITAATDEEKELLKSQMNDENKFGKSTPIMNSSLTEEGGIDPSSSQEVLLKEAIHVMGSKYEDRTLWGYEVGLSYGSIAADTLTSLKMHCHGWRSVYCMPKRDPFRGTAPINLTDRLNQVLRWAVGSLQILFSHHCPLLYGLSGGRLKGLQRIAYINSTVYPFSSIPLLIYCIVPAICLLTDKFITPSVGTFASLVFTALFISIFASAILELRWSGVSLEEWWRSQQFWVIGSVSANLFAVVQSIMGALPLGRVNTNFSIVSKAPDDVEFRELYTIRWTALLIPPTTIIIINLIGIVAGFTDSINSGEHSWGALLGKLFFSLWVIVHLYPFLKGLMGRQNRTPTLIVIWSVLLASIFSLVWVRVDPFVLKTKGPDVKQCGISC* 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1620 975 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Vra2g1620 975 SUPERFAMILY RING/U-box 22 107 - -
Vra2g1620 975 PANTHER CELLULOSE SYNTHASE 1 975 - -
Vra2g1620 975 MobiDBLite consensus disorder prediction 580 596 - -
Vra2g1620 975 MobiDBLite consensus disorder prediction 565 579 - -
Vra2g1620 975 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 975 - -
Vra2g1620 975 SUPERFAMILY Nucleotide-diphospho-sugar transferases 282 773 IPR029044 -
Vra2g1620 975 Pfam Cellulose synthase 590 969 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vra2g1620 975 Pfam Cellulose synthase 282 580 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vra2g1620 975 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 431 568 IPR029044 -
Vra2g1620 975 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 270 378 IPR029044 -
Vra2g1620 975 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Vra2g1620 975 Coils Coil 380 400 - -
Vra2g1620 975 MobiDBLite consensus disorder prediction 564 596 - -
Vra2g1620 975 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 110 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1620 Vra-Chr2 24260304 24265717 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1620 1 975 Cell Wall Biosynthesis AT5G17420 62.561 0.0 1320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1620 K10999 - gmx:100777270 1800.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1620 2 24260304 24265717 Vra7g2401 7 44151577 44156794 PCT