Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1619 ATGGAAGCCAGCGCTGGACTGGTAGCAGGTTCGCATAACCGCAATGAGCTCGTTGTCATTCATGGCCATGAAGAGCACAAGCCTTTGAAGAACTTGGATGGTCAAGTATGTGAGATTTGTGGTGATGGCGTGGGACTCACGGTGGATGGAGACTTATTTGTGGCTTGTAATGAGTGTGGTTTTCCAGTGTGCAGACCTTGCTATGAGTACGAAAGAAGAGAAGGGGGCCAGCTTTGTCCACAGTGCAAAACCAGATATAAGCGTCTCAAAGGGAGCCCGCGCGTGGAGGGAGATGATGAGGAGGAGGATGTGGATGACATTGAGCATGAGTTCAATATTGATGACGAAAAGAACAAGCATGGCCATGCTGCAGAGGCCATGCTTCATGGGAAAATGAGCTATGGAAGAGGTCCTGAAGATGATGAGAATTCCCAGTTCCCAATACCTGTCATTTCTGGGGGCCGATCTAGGCCTGTTAGTGGCGAGTTCCCAATATCATCTAATGGTTATGGAGAGCAGATGTTGTCTTCTTCACTGCACAAACGAGTGCATCCATATCCAGTGTCTGAACCTGGGAGTGCCAGATGGGATGAAAAGAAAGAGGATGGATGGAAAGAAAGGATGGATGACTGGAAATTGCAGCAAGGCAATTTGGGGCCTGAACCTGATGAAGATGCAGATGCAGACATGTCAGATGAAGCAAGGCAACCACTTTCAAGGAAAGTACCAATAGCATCTAGCAAAATCAATCCATACAGAATGGTTATTGTGGCACGCCTTGTCATTCTTGCTTTCTTCCTCAGATACAGACTTATGAATCCTGTGCATGATGCACTGGGGCTGTGGCTAACCTCTATCATATGTGAAATATGGTTTGCTTTTTCATGGATTCTGGATCAGTTTCCCAAATGGTTTCCCATTGATCGAGAGACCTACCTTGACCGTCTTTCCATCAGGTATGAGCGTGAAGGTGAACCAAACATGCTTGCTCCTGTAGATGTCTTTGTTAGCACCGTGGATCCAATGAAGGAACCTCCTCTGGTTACCGCAAACACTGTTCTTTCAATCTTGGCCATGGATTACCCAGTTGATAAGATATCATGCTATATTTCGGATGATGGAGCCTCAATGTGTTCATTTGAGTCCCTGTCAGAAACTGCAGAGTTTGCAAGGAAGTGGGTACCGTTTTGTAAGAAATTTTCTATAGAACCTCGGGCCCCTGAGATGTACTTCAGTGAGAAGATAGACTACTTAAAGGACAAAGTGCAACCCACCTTTGTTAAGGAGCGTCGAGCCATGAAGAGGGAATACGAAGAGTTTAAGGTTAGGATCAATGCACTTGTTGCAAAGGCCCAGAAAGTTCCTCAGGGAGGATGGATTATGCAGGATGGGACACCATGGCCAGGAAACAACACTAAGGATCATCCTGGCATGATTCAAGTGTTTCTTGGAAGCAATGGGGGTCTAGATACTGAAGGAAACCAGCTTCCTCGTCTTGTTTATGTTTCTAGAGAGAAAAGACCTGGTTTTCAACACCACAAGAAAGCTGGTGCCATGAATGCTCTGGTTCGGGTATCTGCTGTTCTCACAAATGCTCCTTTCATGCTGAACTTGGATTGTGATCACTATGTAAATAACAGCAAGGCTGCCAGAGAGGCCATGTGCTTCTTGATGGACCCCCAGATCGGGAAGAAGGTCTGCTACGTCCAGTTTCCTCAAAGATTTGACGGTATTGATACACATGATCGTTATGCCAACAGAAACACAGTTTTCTTTGACATTAACATGAAGGGTCTTGATGGTATTCAAGGACCTGTATATGTGGGGACTGGGTGTGTTTTCAAGAGGCAAGCTTTGTATGGCTATGATCCTCCAAAGGGCCCCAAGCGTCCAAAAATGGTAAGCTGTGATTGCTGCCCTTGTTTTGGAAGCCGCAAGAAGTACAAGGAGAAGAGTGATGCAAATGGAGAGGCTGCTGCAAGCCTAAAAGGGATGGATGATGACAAAGAGATACTGATGTCCCAAATGAATTTTGAGAAGAAATTTGGACAGTCCTCTATCTTTGTGACTTCTACCTTGATGGAAGAGGGTGGTGTGCCTCCTTCTTCGAGTCCAGCTGCCCTGCTTAAAGAAGCCATTCATGTGATCAGCTGTGGATATGAAGATAAAACTGAATGGGGACTCGAGCTTGGTTGGATCTATGGATCTATCACAGAAGATATTTTAACAGGCTTTAAGATGCATTGCCGTGGGTGGAGGTCTATTTACTGTATGCCTAAGAGAGCTGCATTCAAGGGTACTGCTCCAATCAACTTGTCAGATCGTCTCAATCAGGTGCTTCGTTGGGCACTTGGTTCTATTGAGATTTTCTTCAGTCACCATTGCCCTCTATGGTATGGCTTCAAGGAAAAGAAGCTAAAGTGGCTTGAGAGATTTGCCTATGCAAACACAACTGTGTATCCATTCACCTCCATTCCTCTTGTTGCCTATTGTATTCTTCCTGCAGTTTGCTTACTCACTGACAAATTCATCATGCCACCGATAAGCACCTTTGCCGGTTTGTACTTTGTTGCTCTCTTCTCTTCAATCATTGCAACTGGTATTCTAGAGTTGAAATGGAGTGGAGTGAGCATTGAGGAGTGGTGGAGAAATGAGCAGTTTTGGGTGATTGGTGGAGTATCAGCTCACCTGTTTGCTGTGATACAAGGTCTGCTAAAGGTTCTGGCTGGAATTGACACCAACTTCACAGTCACATCCAAGGCAGCAGATGATGAGGACTTTGGAGAACTATACACCTTTAAGTGGACTACTCTCCTAATTCCTCCAACCACTATCTTGATCATTAACATTGTTGGTGTTGTTGCTGGAGTCTCAGATGCCATAAACAATGGGTACCAATCCTGGGGACCACTGTTTGGAAAACTCTTCTTTTCTTTCTGGGTGATTGTTCATCTGTATCCATTCCTTAAAGGTTTGATGGGTCGGCAAAACCGCACACCCACCATTGTGGTGATTTGGTCAGTTCTATTGGCTTCTATTTTCTCTTTGCTGTGGGTAAGAATTGATCCGTTTGTCCTCAAGACTAAGGGACCTGATACCAAGTTATGTGGAATCAACTGCTGA 3123 0.4518 MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDGVGLTVDGDLFVACNECGFPVCRPCYEYERREGGQLCPQCKTRYKRLKGSPRVEGDDEEEDVDDIEHEFNIDDEKNKHGHAAEAMLHGKMSYGRGPEDDENSQFPIPVISGGRSRPVSGEFPISSNGYGEQMLSSSLHKRVHPYPVSEPGSARWDEKKEDGWKERMDDWKLQQGNLGPEPDEDADADMSDEARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRLMNPVHDALGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTVLSILAMDYPVDKISCYISDDGASMCSFESLSETAEFARKWVPFCKKFSIEPRAPEMYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKVPQGGWIMQDGTPWPGNNTKDHPGMIQVFLGSNGGLDTEGNQLPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYVNNSKAAREAMCFLMDPQIGKKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFKRQALYGYDPPKGPKRPKMVSCDCCPCFGSRKKYKEKSDANGEAAASLKGMDDDKEILMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGTAPINLSDRLNQVLRWALGSIEIFFSHHCPLWYGFKEKKLKWLERFAYANTTVYPFTSIPLVAYCILPAVCLLTDKFIMPPISTFAGLYFVALFSSIIATGILELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEDFGELYTFKWTTLLIPPTTILIINIVGVVAGVSDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC* 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1619 1040 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Vra2g1619 1040 Pfam Cellulose synthase 332 1034 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vra2g1619 1040 SUPERFAMILY RING/U-box 21 107 - -
Vra2g1619 1040 SUPERFAMILY Nucleotide-diphospho-sugar transferases 345 852 IPR029044 -
Vra2g1619 1040 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 478 623 IPR029044 -
Vra2g1619 1040 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Vra2g1619 1040 Coils Coil 430 450 - -
Vra2g1619 1040 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1040 - -
Vra2g1619 1040 MobiDBLite consensus disorder prediction 210 237 - -
Vra2g1619 1040 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Vra2g1619 1040 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 1 1040 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1619 Vra-Chr2 24251277 24256590 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1619 1 1040 Cell Wall Biosynthesis AT5G17420 86.084 0.0 1845
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1619 K10999 - gmx:100815436 2068.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2401 7 44151577 44156794 Vra2g1619 2 24251277 24256590 PCT