Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1615 ATGAGTTTACGATCACAAAATCCCATCAAATTGACAACTTTCATCTCTTCCGAAAACATGAGCAACCCTGGAGATGAAAAGGAGCTGTGTCAAAGGAAGAGGAAATCGACCATTTGTGAAGCCTCTAACTTTAGGACATCCAGGAGAAGATTCTGCAGCAACCAAATTGAAGAGGGAGTTTCAACAACATTGAAGCTTTACGATGACCCATGGAAGATCAAGAAGACTCTAACTGATAGTGATTTGGGAATCCTAAGTAGACTCTTGTTTGCTGCAGATTTGGTCAAGAAACAAATTTTGCCTATGTTGGGTGCAGATCATGCAAGAGCTGCTGAAACTGAAGAAGGTACCCCAGTTAGAGTTTGGGACATGGACACCAAATCCATGCACCAACTCGTCCTAAAGCGATGGTCTTCATCCAAGAGCTATGTTCTTATTGGAAAGTGGAACCAAGACTTCGTCAGGAGAAGAGATCTAAAGAAAGGTGATGAGATCGGATTTCATTGGGATCCATATAATTGCATTTTCAATTTCTGTGTTCTCAAACGAGCTATTCCAGATAATTAA 567 0.4092 MSLRSQNPIKLTTFISSENMSNPGDEKELCQRKRKSTICEASNFRTSRRRFCSNQIEEGVSTTLKLYDDPWKIKKTLTDSDLGILSRLLFAADLVKKQILPMLGADHARAAETEEGTPVRVWDMDTKSMHQLVLKRWSSSKSYVLIGKWNQDFVRRRDLKKGDEIGFHWDPYNCIFNFCVLKRAIPDN* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1615 188 SUPERFAMILY DNA-binding pseudobarrel domain 69 182 IPR015300 -
Vra2g1615 188 Gene3D - 70 184 IPR015300 -
Vra2g1615 188 CDD B3_DNA 71 182 IPR003340 GO:0003677
Vra2g1615 188 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 17 183 - -
Vra2g1615 188 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 17 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1615 Vra-Chr2 24208515 24209081 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1615 73 168 RAV Transcription Factor Family AT1G50680 33.010 3.65e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1615 - - gmx:102667341 337.806