Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1600 ATGACGTTGGGCGCGAAATATGCAAACGCGCGTTTCCTCGGAAGCACTTCCGCTTTCTCCCACTACAGAAAAAAAATCGCGGTGGCGAACCTATTCCAGAAGTACGGTTTCCCCTCTTCCCTGATCCCTTCCTTCATCTCCCGCAACCCTTCCCTTCTCCATTCTCCTCTACCTCAACTCCACCATTCCCTCACCACCCTCTTCTCCCTCCGCATCCCCCAAAACGACCTCGTTTCGCTCCTCACAACCAATCCCTCCCTCCTCCACCATTCCTTCCACCACACCCTCCAATCCCGTCTCCCCCATCTCCAAACGCGCTTCCCCACACTCTCCCCTTCCACCCTCCTCAACCTCCTCCTCTCTTCCACAAAGTTACATCTCGACCCGCTCCAACTCTCACCCAAGCTCAACGCGCTCAAAACCGATTTCGCGTTTTCCGACGCCACCGTGGCCAGTATTCTGGAAGGGTTCCCCGACGTGGTTGTCACGAGCGAGAACGAAATCGCGAGCGTGATAGATTTTCTCGCGGGGTTCGGAATTCCCCGGGACGAGGTTGACCTCGTTGTCCGTTCGTTTCCTAGGGTTTTGGCACTCAGTGTTGAGCAGAGGCTGATGCCGTTGTTTCGGGAAATCAAGGAGCTAGGGTTTTCCAATCGTGAGATGAGGATAGAGATCACGCGGGACCCGAGGATTCTGGGGATGGAAATTGGAGAGCTTACGCGGTGTTTGAGACTGATAGAGAGTTTGAAATGCAGGGAAAGTATCAAAGAGAGGGTTATAGGTTCGGGTCTGATGAGAGCGTGTTTTGAGGTGAAATTAAGAGTGGATTGTTTGTGTGGGTATGGTTTGACTCGAAGGGATGCTCTGAAGGTTATTTGGAAGGAGCCTAGGGTGATTTGTTACGAGGTTGGGGATGTTGAAAGGAAGGTTGAGTTTCTGGTTCAGAGGATGAAGTGTAGTGTGGAGTGTTTGGCTGATGTGCCTAAATACTTGGGTGTGAATTTTGAGAAGCAGATTGTGGCTAGGTACAGTGTGGTGGAGTGTTTGAGGGGGAAGGGTGCCATTGGGTTTGAGTTTGGGTTGAAGGATTTGGTTATGCCTTCTAGGCTTAGGTTCTATAATCTTTATGTGAAGCCATACCCGGAGTGTGAAAAGATCTATGGAAGGTTTTCTGGGCGTGGTGTTCAAGTTAAGACGAAGCATCCCGCTGGACTGTGGAAACTTTTTAAACCGCAGAAGTTTGCTGAAAGGGATGAAGATGTGAAGAGCGTGAGGTCATTCATGGAGTCTCTGGTTTAG 1299 0.5073 MTLGAKYANARFLGSTSAFSHYRKKIAVANLFQKYGFPSSLIPSFISRNPSLLHSPLPQLHHSLTTLFSLRIPQNDLVSLLTTNPSLLHHSFHHTLQSRLPHLQTRFPTLSPSTLLNLLLSSTKLHLDPLQLSPKLNALKTDFAFSDATVASILEGFPDVVVTSENEIASVIDFLAGFGIPRDEVDLVVRSFPRVLALSVEQRLMPLFREIKELGFSNREMRIEITRDPRILGMEIGELTRCLRLIESLKCRESIKERVIGSGLMRACFEVKLRVDCLCGYGLTRRDALKVIWKEPRVICYEVGDVERKVEFLVQRMKCSVECLADVPKYLGVNFEKQIVARYSVVECLRGKGAIGFEFGLKDLVMPSRLRFYNLYVKPYPECEKIYGRFSGRGVQVKTKHPAGLWKLFKPQKFAERDEDVKSVRSFMESLV* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1600 432 SMART mt_12 151 181 IPR003690 GO:0003690|GO:0006355
Vra2g1600 432 SMART mt_12 43 73 IPR003690 GO:0003690|GO:0006355
Vra2g1600 432 SMART mt_12 289 320 IPR003690 GO:0003690|GO:0006355
Vra2g1600 432 SMART mt_12 222 252 IPR003690 GO:0003690|GO:0006355
Vra2g1600 432 SMART mt_12 186 217 IPR003690 GO:0003690|GO:0006355
Vra2g1600 432 SMART mt_12 321 355 IPR003690 GO:0003690|GO:0006355
Vra2g1600 432 Gene3D Transcription termination factor 3, mitochondrial 162 390 IPR038538 -
Vra2g1600 432 PANTHER CGI-12 PROTEIN-RELATED 40 430 IPR003690 GO:0003690|GO:0006355
Vra2g1600 432 Pfam mTERF 273 364 IPR003690 GO:0003690|GO:0006355
Vra2g1600 432 Pfam mTERF 117 239 IPR003690 GO:0003690|GO:0006355
Vra2g1600 432 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF15, MITOCHONDRIAL 40 430 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vra2g1600 mTERF 3.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1600 - - gmx:100783135 616.305