Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1596 ATGGCAGCAAAACTCCTGCAATCTTTAGCAGATGAAAACCCAGATCTGCAGAAGCAGATAGGATGCATGACTGGGATTTTTCAGCTTTTTGATCGTCACCATGCTCTCACGGCTCGCCGCATTGCCCAGAAGAGGCTTCCTTCTGGTAATTCGCACTTCAATTATGGAAGCTTGGAAAGAGATTCTAATAATATACACCATCGCCAAACAACAACTGATACTAGCTTAAACAAGGGTGTGAATGAAAGGCAGAGAATTTCAACCGAATCATCAAGAGCATCATTCTCTTCTTGTTCATCATCAGTGTCCTCTTTGGACTGCAAGGCTGAAGCAGAGGCTCCATTTGACCGGATTCTTTTTCCTGAAACTCCTTCAAGGGATGCAGCCATGAACCAATCAATCGTCTCTTCCCATTTTGGATGTAACTCCCTTGACCTTAGGGACGTGGTGAAAGATTCTATGTATAGGGAAGCCCGAGGGCTGTCAGTGAAGACTACAGACAAAGAAGAATCTGCCATTAACGCCATGAAGCACAGGGATTCACCACGTCCTATGCAGTTGCCCAAATCTGTTGATGGATCTTATAGAGGTGGAATAGATGGAAAACAAAGTGTGCCTATTGATTTAAAGGAGTCAATCCGAGTCCTTGCTAAACTTAGAGAAGCACCTTGGTATTATGCAGAAACTAAAGAACTTCCAAGATCATCACATGATGTAAAAGATGGACCCTGGCATTCGAACTCAAAGGATGCTTCTTGGTTTGGTTATGAAGGAAAGGAAATAAGTCGTTTGTCTTTTGAATCACGAGAGACCATCAAATCCACACCAAAACTAAAAGAGTTTCCTAGACTTTCACTGGATAGTAAGGAAGGTTCATTACGCCCTTATAGTTCTGATTCAGCTACTCGCCCATCAAGAAACATTTACACTGGCACACCCACATCAAATGACAAATTCTCTACCCTACAACAGCCTTCAACAATCCCCAGTCGTCCACCTGGTGTCGTGGCAAAATTAATGGGCTTGGAAGCATTACCAGATTCCTCTTTGGCTGGTGACACTCAACCAAGTTCAACTGAAACTTACTCAGCACAAGATAATAGTCAGTTTCCAAGATCATCAAAACAAGGACTCACCAGGCCACTCCGAGTTTCTCATTCTCCAAAAGTTTCTTTGAAAGACCCAACTTCCCCGCGACGAAAAAATCCTGATCTAGTTATGAAACCCATCTCAAGTTCAAGGTTTCCCATTGAACCAGCTCCATGGAAGCAGCAAGATGGAAATCGAAGCTCCCAGAAACTGAATTTAAGGGGTGTAAAAGCTCCAGTGAGAGCACCAGATACCTTTCCTTCAGTTTATAGCGAGATAGAGAAGAGATTGAAGGATCTTGAATTCAAACAATCTGGAAGGGATCTCAGAGCATTAAAACAGATACTTGAAGCAATGCAAGAAAAGGGACTATTAGAGAGCAGAAAAGAAGAACAAGCTCCAAATGTTATTGGAAGTCAAAATGACTATGAACAAAGAGCTACCAGCCAAGATCAGAATACCAGGTCATTAAGGCAACAAAACTCTCAGAGAAACAATTTTCTATCATCCACAATCAAGGGAACTGAATCAGCAAGGGCTTTTGAATCCCCAATAGTGATAATGAAGCCAGCAAAGCTTGTTGAGAAAACTTCAATTCCTGCTTCTTCAGTCATTTCGATTGGTGGTCTTTCTGTTTCCCAGAAACACCAGAATGCTGGTGTATATTTAGATAATAGAACCAGTACATCTGCTACTCGAGTAGCAAAAGATCAGTCTTCCAAGAACATTCATCGGGATGCTTCTGCCAGTTCCATTGATAAGAAAGCAAATGGTAGTAAGACTACTAGATCTGCACAATCTCAATCTAGGTCTCAGCAACATCTAAAAGAAAATAGCCAAAGTTCTGTGAAGCACTCAGGAACCGTGAGCCCTAGATTGCAACAGAAGAAGTTGGAGTTAGAGAAGCGATCTCGTCCACCTGCTCCACCATCAGATTCAACCAAACTCAGAAGGCAATCTGGTAAGAAGGCAACAGAGTCAGGTTCACCAGGTGGGAAACAAAGACCCAAAACCCTCAACTCGCGGCATAATGATGAGCAACTGAGTGAGATAAGCAACGAATCAAGAAGTTTAAGTTGCCTGGGGGATGAAATTTCTTTGCAATCAGACAGTTTAACTGTCAACTCAAAGATGGAAGTGGAAGTCACAAGTAGTTTAAAGTCTGTTGAAATTGATGACAGCCAAAGTCCATCTTTGAAGGCTGTGAAGCAATTGATTTCAGAGACAGCGCAAAAAAAATCAACTCCAAGATTGGATGAGGATGAGTCAGTTGCAGAACTTGGAGGAGATGCTCCAGAACATCCAAGTCCTATCTCAGTTCTCGATGGATCGGTGTACAGAGATGATGTGCCATCCCCAGTAAAGCAGATATCTGAAGATTCAAAAGGTGATGATGCTCAAGAATCCAAAGAAAATGAGATTAAAGATCAATGGAACCCAGCAGAAAGCCTTTCATTTCACAGCATGGGATCAGGAGAGATCAATCGAAAAAAATTACAAAACATAGACCACCTTGTTCAGAAGCTTCGACGGCTGAACTCCAGTCACGATGAAGCTAGAATTGACTATATTGCTTCCCTATGTGAAAACTCAAATCCAGATCACAGATACATCTCTGAAATATTATTAGCTTCAGGCCTCTTACTCAGAGATTTGAGTTCCGAGTTGCTGACATTTCAACTTCACTCTTCGGGTAATCCCATTAACCCTGAGTTATTCCTTGTCTTGGAACAGACCAAGGCAAGTAGTTTGCTTTCAAAAGAAGAAAGCACCCCCGAAAAAGATTCTAACATGAAGCTGAACAAAGAGAAATTTCACAGGAAATTCATCTTTGATTCTGTGAATGAGATTCTTGGTGCCAAATTAGGCTCATCCCCAGAGCCATGGTTTCTGCCTAACAGTAACAGACTCACAAAGAAAACCTTGAGTGCTCAAAAGCTCCTCAAAGAACTATGCTTTGAGATCGAGAAAATTCAAGCCAAGAAGCCAGAATGCTGCTTAGAAGATGAAGATGATGATCTGAAAAGTATGCTGTGTCAAGATGTTATGCTTGGCTCAGAAAGTTGGACAGATTTTCATGGTTATTTACCTGGGATTGTGTTGGATGTTGAGAGACTTATATTCAAAGACTTGGTTGATGAAGTTGTGATTGGTGAATCATCTGGTTTGCGAGTCAAGCCATCAGTTAGGCGCAGGAAGCTATTTGGAAAGTAG 3303 0.4184 MAAKLLQSLADENPDLQKQIGCMTGIFQLFDRHHALTARRIAQKRLPSGNSHFNYGSLERDSNNIHHRQTTTDTSLNKGVNERQRISTESSRASFSSCSSSVSSLDCKAEAEAPFDRILFPETPSRDAAMNQSIVSSHFGCNSLDLRDVVKDSMYREARGLSVKTTDKEESAINAMKHRDSPRPMQLPKSVDGSYRGGIDGKQSVPIDLKESIRVLAKLREAPWYYAETKELPRSSHDVKDGPWHSNSKDASWFGYEGKEISRLSFESRETIKSTPKLKEFPRLSLDSKEGSLRPYSSDSATRPSRNIYTGTPTSNDKFSTLQQPSTIPSRPPGVVAKLMGLEALPDSSLAGDTQPSSTETYSAQDNSQFPRSSKQGLTRPLRVSHSPKVSLKDPTSPRRKNPDLVMKPISSSRFPIEPAPWKQQDGNRSSQKLNLRGVKAPVRAPDTFPSVYSEIEKRLKDLEFKQSGRDLRALKQILEAMQEKGLLESRKEEQAPNVIGSQNDYEQRATSQDQNTRSLRQQNSQRNNFLSSTIKGTESARAFESPIVIMKPAKLVEKTSIPASSVISIGGLSVSQKHQNAGVYLDNRTSTSATRVAKDQSSKNIHRDASASSIDKKANGSKTTRSAQSQSRSQQHLKENSQSSVKHSGTVSPRLQQKKLELEKRSRPPAPPSDSTKLRRQSGKKATESGSPGGKQRPKTLNSRHNDEQLSEISNESRSLSCLGDEISLQSDSLTVNSKMEVEVTSSLKSVEIDDSQSPSLKAVKQLISETAQKKSTPRLDEDESVAELGGDAPEHPSPISVLDGSVYRDDVPSPVKQISEDSKGDDAQESKENEIKDQWNPAESLSFHSMGSGEINRKKLQNIDHLVQKLRRLNSSHDEARIDYIASLCENSNPDHRYISEILLASGLLLRDLSSELLTFQLHSSGNPINPELFLVLEQTKASSLLSKEESTPEKDSNMKLNKEKFHRKFIFDSVNEILGAKLGSSPEPWFLPNSNRLTKKTLSAQKLLKELCFEIEKIQAKKPECCLEDEDDDLKSMLCQDVMLGSESWTDFHGYLPGIVLDVERLIFKDLVDEVVIGESSGLRVKPSVRRRKLFGK* 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1596 1100 Pfam DUF761-associated sequence motif 330 349 IPR032795 -
Vra2g1596 1100 MobiDBLite consensus disorder prediction 489 534 - -
Vra2g1596 1100 MobiDBLite consensus disorder prediction 178 198 - -
Vra2g1596 1100 MobiDBLite consensus disorder prediction 283 334 - -
Vra2g1596 1100 PANTHER LONGIFOLIA PROTEIN 1 1098 IPR033334 GO:0051513
Vra2g1596 1100 PANTHER LONGIFOLIA PROTEIN 1 1098 - -
Vra2g1596 1100 MobiDBLite consensus disorder prediction 291 330 - -
Vra2g1596 1100 MobiDBLite consensus disorder prediction 591 722 - -
Vra2g1596 1100 MobiDBLite consensus disorder prediction 350 381 - -
Vra2g1596 1100 MobiDBLite consensus disorder prediction 347 439 - -
Vra2g1596 1100 MobiDBLite consensus disorder prediction 496 534 - -
Vra2g1596 1100 MobiDBLite consensus disorder prediction 776 791 - -
Vra2g1596 1100 MobiDBLite consensus disorder prediction 686 700 - -
Vra2g1596 1100 Pfam Domain of unknown function (DUF4378) 897 1077 IPR025486 -
Vra2g1596 1100 MobiDBLite consensus disorder prediction 816 838 - -
Vra2g1596 1100 MobiDBLite consensus disorder prediction 68 91 - -
Vra2g1596 1100 MobiDBLite consensus disorder prediction 50 91 - -
Vra2g1596 1100 MobiDBLite consensus disorder prediction 615 656 - -
Vra2g1596 1100 MobiDBLite consensus disorder prediction 773 838 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1596 Vra-Chr2 23943837 23949686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1596 137 1099 TRM (TON1 Recruiting Motif) Superfamily AT1G74160 47.571 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1596 - - gmx:100787391 1826.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1952 7 38988715 38993914 Vra2g1596 2 23943837 23949686 PCT