Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1595 ATGATGATGATGGGGAGTTCAAGAGAAGGTCAACAAGCGAAGCAAGAAGGTGGCGCCATTAATATTGACAAGTTTTCCAAGGCATCCTCCAGTACAAGACAATGGTCAGCGTTTAGAAATCCAAGAATTGTGAGAGTGTCACGTTCTTTCGGAGGAAAAGATAGGCACAGCAAGGTTTGCACCATAAGAGGGTTGAGGGACAGAAGGATTAGGCTCTCAGTGCCCACAGCAATTCAGCTATATGATCTTCAGGACAAGCTTGGGCTGAACCAACCAAGCAAAGTGATAGATTGGTTGCTTGAAGCAACTAAACTTGACATTGACAAGCTTCCTCCACTTCAATTCCCTCAGGGTTTTGGTCAATTTCATCATCCACAAACCCTACTCCCCTTTCATGATTCAAGTTCCTCTCAGCTTTCTCTCGGACCCTTCGGTGAATCTAGCTCCTCATTTGTAAGGGATGGTGGGGTTCAAAACTCCATGGCAAAGTCAAGGTATTGGGACAGCATAGATTCAATATCAAGATTGAAAGGCAAGGAAGGTGAAAAGGGCAAGTGGGTCAAAACAAACGAGGATGAAAATCAAGAAGATGATGTTGTTGGAAGCTACAGCAACTTGCATGCATCTACTCAGAGGCTTTTCCCTATGGGTAGTGGTACCACCACTACTCACTCACTTTTACCTGGTTTGTTAAACAATACCATGCCATATAACCCCTACAACGCTGAGCCTTCTGGTTTGTCGTTATCCCAATTTGGAGGCCATGGCTTGTTTCCTTCCCAGCAGGTAGATCCCGGTCCAAGCAGTGCAAATGGTGTTCAATTCCCATCTTCTTTGGCATTACCTTCATCTGCTTCTCAATTTTTCCTTGGTTCATCTTCTGCTACACCACCAATGTTCACTACCTATGCTCCATTTCTTACACCCTCACTTGACAATGATCCTAGACAGTTCAACCACATTCAGTTCTTGAACTCAGCTTCTCAAATCTTGCCTCATCCTCTCATTCCATCTCTTCACTCCTTGAATCCACATGTCAGACCCTTCCCAGCAACACCCTTTAGTTCAAAGCTTTTGGAGTCAGATAGCATCCGCAGCCAACATGATAAGGATAGCTCTTCTTGA 1125 0.4462 MMMMGSSREGQQAKQEGGAINIDKFSKASSSTRQWSAFRNPRIVRVSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLNQPSKVIDWLLEATKLDIDKLPPLQFPQGFGQFHHPQTLLPFHDSSSSQLSLGPFGESSSSFVRDGGVQNSMAKSRYWDSIDSISRLKGKEGEKGKWVKTNEDENQEDDVVGSYSNLHASTQRLFPMGSGTTTTHSLLPGLLNNTMPYNPYNAEPSGLSLSQFGGHGLFPSQQVDPGPSSANGVQFPSSLALPSSASQFFLGSSSATPPMFTTYAPFLTPSLDNDPRQFNHIQFLNSASQILPHPLIPSLHSLNPHVRPFPATPFSSKLLESDSIRSQHDKDSSS* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1595 374 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 2 371 IPR005333 GO:0003700
Vra2g1595 374 Pfam TCP family transcription factor 52 164 IPR017887 -
Vra2g1595 374 PANTHER TRANSCRIPTION FACTOR TCP17 2 371 - -
Vra2g1595 374 ProSiteProfiles TCP domain profile. 52 110 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1595 Vra-Chr2 23913988 23916608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1595 36 374 TCP Transcription Factor Family AT5G60970 40.625 5.24e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vra2g1595 TCP 1.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1595 - - gmx:100788984 559.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1951 7 38982355 38985583 Vra2g1595 2 23913988 23916608 PCT