Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1584 ATGCTAATGTTTTTCAAAAGAGATAGAGAAACGTTCGGCTGTCGCAAAACACTTGAAGGAGCAAAAATCGCAGAAGCAACCATGGCTGAAGCAGAAGACAAAGATACCAGCTCGCCGGAGCGTGAAAACCAAACCAAAATCAACAAGAAGAAGCTTCGCAAGAGAAAAAGACCAAATAAGAGCGAGAATAAACAAGAGGAGGAAAACGATGCGAAGATTGATAGCACGCTGACACAAACCGAAGATACAGAAGAAGAAGAAAAAGAAGAGACAAAGGTGAACAATAACGATTCATGTGGAATCATGAGTTCCGAGTTTTTCTCCTCTCTTACCTTGTCCGAAGCTACTTCCAATGCCATTGCGGACATGGGCTTCGACCGTATGACTCAGATTCAAGCGCGGGCGATTCCGCCGCTACTGATCGGAAAGGACGTGCTGGGTGCGGCGAGAACGGGTGCTGGGAAAACCCTAGCGTTTTTGGTTCCGGCGGTGGAGTTGCTGTACAACGCTCAGTTCACGCCGCTCAATGGAACGGGTGTTGTTGTGATATGTCCGACGAGAGAACTCGCGATTCAGACGCACGCCGTGGCGAAGGAACTGTTGAAGTACCATTCGCAAACGCTCGGGTTGGTGATTGGGGGTGCGGGGCGAAAGGGAGAGGCTGAGCGCATTGTGAAAGGGGTAAACCTATTGGTGGCGACGCCGGGTAGGCTCCTCGATCATCTTCAAAACACGAGGGGGTTCATATATAAAAACTTGAAGTGCCTCATGGTCGATGAAGCTGACAGGATATTAGAAGCAAACTTTGAGGAAGAGATGAAGCAGATAATTAACATACTTCCAAAGAAAAGGCAAACAGCTTTGTTTTCAGCCACACAGACAAAGAAGGTTGAGGATCTTGCCCGCTTATCTTTTCAGACAACTCCTATCTTTATTGATGTAGATGATGGGAGAAAAAAGGTCACAAATGAAGGATTGCAACAGGGTTATGTTGTTGTTCCCTGTGCTAAGCGTTTTGTTGTTCTCTACTCATTCTTGAGGAGATATCAATCAAAAAAAGTGATGGTTTTTTTCTCTTCATGCAACTCTGTCAAATTCCACGCGGATCTTCTCAAGTGCACTGGGTTGGACTGCTTAAATATTCATGGAAAACAAAAACAACATGCCCGTACTACTACGTTCTTCAAGTTCTGCAAAGCTGAAAAGGGGATCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTTGACATTCCTGATGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGGAATATATCCATAGGGTTGGTAGAACAGCTCGTGGGGAAGGTGCAAAGGGAAATGCTTTACTTTTTCTGATTCCTGAAGAATTGAAATTTCTTCACTATTTGAAGGCAGCGAAGGTTCCTGTGAAAGAGTATGCATTTGATCATAAGAAGCTGGCAAATGTACAATCTCATCTGGAGAAGTTGGTAGCTGGCATTTATCATTTGAACAATATGGCTAAAGAGGCATATCGGTCATATATATTAGCATATAATGCACATTCTATGAAAGATATATTCAATGTTCATCGCCTAGATTTACTGGCTGTTGCTACTTCATTTTGTTTTTCCAACCCACCGAAGGTGAATCTGAGCATAGATAGCAGTGCTTCAAAGCATAGGAAGAAAGTACGCAAACTGGAAGGAAAGAGATGA 1710 0.4409 MLMFFKRDRETFGCRKTLEGAKIAEATMAEAEDKDTSSPERENQTKINKKKLRKRKRPNKSENKQEEENDAKIDSTLTQTEDTEEEEKEETKVNNNDSCGIMSSEFFSSLTLSEATSNAIADMGFDRMTQIQARAIPPLLIGKDVLGAARTGAGKTLAFLVPAVELLYNAQFTPLNGTGVVVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGAGRKGEAERIVKGVNLLVATPGRLLDHLQNTRGFIYKNLKCLMVDEADRILEANFEEEMKQIINILPKKRQTALFSATQTKKVEDLARLSFQTTPIFIDVDDGRKKVTNEGLQQGYVVVPCAKRFVVLYSFLRRYQSKKVMVFFSSCNSVKFHADLLKCTGLDCLNIHGKQKQHARTTTFFKFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGAKGNALLFLIPEELKFLHYLKAAKVPVKEYAFDHKKLANVQSHLEKLVAGIYHLNNMAKEAYRSYILAYNAHSMKDIFNVHRLDLLAVATSFCFSNPPKVNLSIDSSASKHRKKVRKLEGKR* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1584 569 CDD DEADc_DDX18 116 313 IPR044773 GO:0003724|GO:0005524
Vra2g1584 569 Pfam DEAD/DEAH box helicase 129 300 IPR011545 GO:0003676|GO:0005524
Vra2g1584 569 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 136 311 IPR014001 -
Vra2g1584 569 PANTHER RNA HELICASE 70 551 - -
Vra2g1584 569 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 341 495 IPR001650 -
Vra2g1584 569 MobiDBLite consensus disorder prediction 59 79 - -
Vra2g1584 569 Pfam Domain of unknown function (DUF4217) 487 547 IPR025313 -
Vra2g1584 569 Gene3D - 28 315 IPR027417 -
Vra2g1584 569 SMART helicmild6 365 446 IPR001650 -
Vra2g1584 569 Gene3D - 322 564 IPR027417 -
Vra2g1584 569 SMART DUF4217_3 486 549 IPR025313 -
Vra2g1584 569 CDD SF2_C_DEAD 326 456 - -
Vra2g1584 569 Pfam Helicase conserved C-terminal domain 341 445 IPR001650 -
Vra2g1584 569 MobiDBLite consensus disorder prediction 26 47 - -
Vra2g1584 569 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 70 551 - -
Vra2g1584 569 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 467 IPR027417 -
Vra2g1584 569 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 105 133 IPR014014 GO:0003724
Vra2g1584 569 SMART ultradead3 124 329 IPR014001 -
Vra2g1584 569 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 257 265 IPR000629 -
Vra2g1584 569 MobiDBLite consensus disorder prediction 23 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1584 Vra-Chr2 23781973 23788010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1584 105 464 Eukaryotic Initiation Factors Gene Family AT3G13920 31.608 2.18e-44 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1584 K13179 - gmx:100798290 936.021