Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1577 ATGCAATCTCAAATTTCAGATACGTTTCCCTCTCACTGTCAAAATGAAACAATTTCCTGTTATGACCCAGCAGCATTTAACTACACCAGACCCTTTTCCATTCACTCTGAAAGCAACCCAACATGGAAACAACAAAACAACACTGACCTTCCTCCTTTGTCCTTTTTCCACTTTCCTTCTCCTCCCTTTGAAGACACTCATGTTTTCCTCCAACAACACCACGATTTCCTCCTTCAGTTTCACCATAACCCTCCACCTCAAAACCCCGATCCTCAACCGGTTAGTCTTTCCGTGGAGACTTCTGCTAAGAAGAATATTCAAACCCCCAGAAAAAGACCTGGCAAGAGAGATAGACACAGCAAGATCAGCACCGCAGGGGGACTGAGGGATAGGAGAATGAGACTTTCCCTTGATGTTGCAAGGAGGTTTTTCGGTTTGCAAGATATGCTGGGCTTTGACAAAGCTAGCAAGACCGTGGAGTGGCTGCTGAACCAAGCAAAAGCTGAAATCAATCGTCTAGCGAAGGAGAAAAAGAAGCAGAAGAAGAGTGTTCACCGCAGTTGCTGCAGTGCTGGTTCGGAATGTGAAGAAGGTGTGTCTAGTCTTGATGAGGTTGCAGTGAGTAGAGATGAAGAAGAAGCGGGAGAAGAGAGAGTGGACAAAGTGATGAAGAGAAGGGTTAAGCATTCTAGGAAGATCAGTGCATTCCATCCTCTTGCAAGGGAGTGCAGGGAAAGGGCAAGAGAGAGGGCAAGAGAGAGGACAAGAGAAAAGATGAGAAGTCGTGGCCTGGCCGAAGAATCAAAGCCATGTAGAGAGGAAGAAAATCAAAATCTAATCCAATCGGGTTCTTGGAAACCCTCAGAAACTGGAGAAGAATTTGTTACCAAGAGCCACGGTTTGCATCCTTCCTTGGACGAGATCACTGAGGGTAAAGAACATGGCTACAACGCAAAGGAGCATGATGATGACGATTCTTTGGTTATTTTGAGCAAATGGAGCCCCTCCTTGATCTTCAATAACTATGGATTCTCTCACGAACATCAATTTGCAGAATTTCAGCCCTTGGGAAAGCCATGGGAGGCCTAG 1089 0.4573 MQSQISDTFPSHCQNETISCYDPAAFNYTRPFSIHSESNPTWKQQNNTDLPPLSFFHFPSPPFEDTHVFLQQHHDFLLQFHHNPPPQNPDPQPVSLSVETSAKKNIQTPRKRPGKRDRHSKISTAGGLRDRRMRLSLDVARRFFGLQDMLGFDKASKTVEWLLNQAKAEINRLAKEKKKQKKSVHRSCCSAGSECEEGVSSLDEVAVSRDEEEAGEERVDKVMKRRVKHSRKISAFHPLARECRERARERARERTREKMRSRGLAEESKPCREEENQNLIQSGSWKPSETGEEFVTKSHGLHPSLDEITEGKEHGYNAKEHDDDDSLVILSKWSPSLIFNNYGFSHEHQFAEFQPLGKPWEA* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1577 362 MobiDBLite consensus disorder prediction 250 274 - -
Vra2g1577 362 MobiDBLite consensus disorder prediction 250 290 - -
Vra2g1577 362 PANTHER TRANSCRIPTION FACTOR TCP18 39 330 - -
Vra2g1577 362 MobiDBLite consensus disorder prediction 275 290 - -
Vra2g1577 362 Pfam TCP family transcription factor 114 261 IPR017887 -
Vra2g1577 362 Coils Coil 156 183 - -
Vra2g1577 362 MobiDBLite consensus disorder prediction 102 127 - -
Vra2g1577 362 ProSiteProfiles TCP domain profile. 115 173 IPR017887 -
Vra2g1577 362 ProSiteProfiles R domain profile. 241 258 IPR017888 -
Vra2g1577 362 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 39 330 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1577 Vra-Chr2 23675039 23677116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1577 90 255 TCP Transcription Factor Family AT3G18550 44.324 2.64e-31 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vra2g1577 TCP 3.1e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1577 - - pvu:PHAVU_009G200600g 513.457