Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1568 ATGGCATCTCAAGCAGAACTTAGCATGGAGTACAAGCCCTACACCTATTCCACACTGCTGAAATCCTTTGCAGACCAAACTGATCAGACCTACAAGCTCGAAGACTTTCTTTCTCGCTTAGAGGAAGAACGTCTCAAGATTGATGCCTTCAAGCGCGAGCTTCCTCTCTGCATGCAACTCCTCACCAACGCTGTGGATGCTTCAAGGCAGCAGCTACAGACCTTCAGATCAAACCAAGGTACAAGGCCAATTCTGGAAGAGTTCATACCCATAAAGCATCCAAATTCTCAAGAAAGCACTGAGAAGGCATCAAACATATCAGACAAGGCGAGTTGGATGACATCAGCTCAACTATGGAGCCAGGCAAGCGAAGGAACCAAACCAAAATCCACAATTACATCACCTAAAAAAAGTGCTGATACAGGGTTTAGCGTGAGCCCTAGGCTAGCCCTAGACAGCAAACGTAGGAATGGAGGAGCCTTTTTACCATTCTCAAAAGAGAGAAACGCATGCCAAGGAATGGGGGATCTTCCTGAGTTAGGCCTTGCCTCCTCTGAGAGTGAAATGGAGGTGAAGAAATGTGAAGAGACAGAGAAATGTTCCAAAAGGGAGAATTCAGGCAAAGCTGGGAGTTTTGAAGGTATTGTTGATCAGGGAAAAATTGCTGCAATTGCAACCGAGGCACAAACAACTAACACTACAACCACCACAACTGGCCGGAAAGCAAGACGGTGTTGGTCACCGGACTTGCACCGTCGATTTGTTAATGCTCTTCAAATGCTTGGTGGATCTCAAGTGGCCACCCCAAAACAGATTAGGGAGTTGATGAAGGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATCTCCAGAAATATAGGCTTCACACTAGAAGACCCAGCCCAAGCCTACATGCAGGAGCACCAACACCACAAGTTGTAGTCCTTGGAGGAATTTGGGTGCCACCGGAATATGCCACTGCTGCCGCACACTCCGATGGCACCAGCTTCTACGGCCCACATCCCACCTCACACGTGCCACCGCCACACTACTGTGCAGCCACCCCGGTGTCTCAAGAGTTCTACAACTCAGCTCCGTCACTGTCGTTTCCACCACCACACGACCACACTCTCCATCACCACCATTTTCACATGTACAAGACAGCACCACACACCCAAAGCTCTCCAGAATCAGATGTTCGGAGCGGTGGCGACCGATCTGAGAGCATCGAGGATGGGAAGTCGGAGAGTGGTAGCTGGAAAGGAAATGGAGAGAAGAAAGGTTTGGCTGCACTGAGAGATCAAGAAGGGGAAGACAGCACTGGGAGTGAGATCACACTTAGATTCTAG 1350 0.4896 MASQAELSMEYKPYTYSTLLKSFADQTDQTYKLEDFLSRLEEERLKIDAFKRELPLCMQLLTNAVDASRQQLQTFRSNQGTRPILEEFIPIKHPNSQESTEKASNISDKASWMTSAQLWSQASEGTKPKSTITSPKKSADTGFSVSPRLALDSKRRNGGAFLPFSKERNACQGMGDLPELGLASSESEMEVKKCEETEKCSKRENSGKAGSFEGIVDQGKIAAIATEAQTTNTTTTTTGRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSLHAGAPTPQVVVLGGIWVPPEYATAAAHSDGTSFYGPHPTSHVPPPHYCAATPVSQEFYNSAPSLSFPPPHDHTLHHHHFHMYKTAPHTQSSPESDVRSGGDRSESIEDGKSESGSWKGNGEKKGLAALRDQEGEDSTGSEITLRF* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1568 449 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 238 298 IPR017930 -
Vra2g1568 449 Coils Coil 33 53 - -
Vra2g1568 449 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 449 - -
Vra2g1568 449 MobiDBLite consensus disorder prediction 120 141 - -
Vra2g1568 449 MobiDBLite consensus disorder prediction 401 443 - -
Vra2g1568 449 Gene3D - 240 298 - -
Vra2g1568 449 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 241 296 IPR006447 GO:0003677
Vra2g1568 449 MobiDBLite consensus disorder prediction 388 449 - -
Vra2g1568 449 Pfam Myb-like DNA-binding domain 243 294 IPR001005 -
Vra2g1568 449 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 449 IPR044787 GO:0003700|GO:0006355
Vra2g1568 449 MobiDBLite consensus disorder prediction 120 144 - -
Vra2g1568 449 SUPERFAMILY Homeodomain-like 238 299 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1568 Vra-Chr2 23593978 23596743 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1568 1 449 G2-like Transcription Factor Family AT2G03500 50.000 1.12e-123 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra2g1568 Myb_DNA-binding 9.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1568 - - gmx:100815048 714.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2205 7 42023793 42026699 Vra2g1568 2 23593978 23596743 PCT