Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1560 TATCACGACACTGGAAGAGAAAAAGAATACTTGCCACAGGTTGGTCAGTGGAACATGATGAACAAGAAAGTAATAAATGGAAGTACTGTAAGATATTGGGCATGTATCAATTTCTCTCGAAGTGTACAGGAAAGTACAGCTCGTGGATTTTGTCAACAGTTAGTTCAGATGTGCCAAATCTCAGGCATGGAATTCAGTCAGGACCCTGTGATTCCTATATATTCTGCAAGACCAGATCAGGTAAAGAAGGCTTTGAATTATGTACACTCTGCTGCTATGGATAAGCTTTGTGGTAAAGAGCTAGAGTTACTGATTGCCATTCTTCCAGACAATAATGGCTCTCTGTACGGTGATCTCAAAAGGATTTGCGAAACAGATCTGGGGTTGATCTCTCAATGCTGCCTTACAAAACATGTATTCAAGATCAATAGACAATACCTTGCAAATGTGGCACTTAAAATCAATGTCAAGATGGGAGGAAGAAACACAGTGCTTTTGGATGCTTTAAGTTGGAGGATTCCACTGGTGAGTGATATTCCAACAATAATATTTGGAGCTGATGTAACGCATCCAGAATCAGGAGAGGATTCTTGTCCATCCATTGCTGCTGTTGTAGCCTCCCAGGACTGGCCAGAAGTAACAAAGTATGCAGGGTTGGTCTGTGCTCAGCCTCATCGAGAAGAACTTATTCAAGATCTTTTCAGATCTTGGAAAGATCCACAGAGGGGTGTAACATATGGTGGTATGATCAGGGAGCTTTTACTATCATTCAAGAAGGCAACGGGACAAAAACCATTGAGAATAATCTTTTACAGGGATGGGGTAAGTGAAGGACAATTCTACCAGGTTTTGCTATATGAGCTTGATGCCATCCGCAAGGCTTGTGCATCTTTGGAACCTAGTTACCAGCCACCAGTAACATTTGTAGTAGTTCAAAAGCGGCATCACACTAGACTCTTTGCAAACAATCACGATGACAGGAATAGTACTGATAAGAGTGGAAATATCTTACCTGGAACTGTGGTAGATTCTAAGATCTGTCATCCTTCTGAATTCGACTTCTACTTATGCAGTCATGCAGGAATTCAGGGTACAAGTAGACCAGCACACTATCATGTCCTCTGGGACGAGAACAATTTCACTGCAGATGAGATTCAGTCTCTTACCAACAATTTATGCTACACTTATGCAAGATGTACACGGTCTGTTTCTGTAGTGCCTCCCGCATACTATGCTCATCTAGCAGCCTACAGGGCTCGATTCTACATGGAACCTGATGTTGTTGAGATTAGCAAACTGCGAGGAACAAGGTCGAAAGAGGGGTCAGTTCGGGCACTGCCTGCTCTGAAAGAGAAGGTGAAAAATGTTATGTTTTACTGTTGA 1383 0.4223 YHDTGREKEYLPQVGQWNMMNKKVINGSTVRYWACINFSRSVQESTARGFCQQLVQMCQISGMEFSQDPVIPIYSARPDQVKKALNYVHSAAMDKLCGKELELLIAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKINRQYLANVALKINVKMGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGEDSCPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFRSWKDPQRGVTYGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPSYQPPVTFVVVQKRHHTRLFANNHDDRNSTDKSGNILPGTVVDSKICHPSEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYMEPDVVEISKLRGTRSKEGSVRALPALKEKVKNVMFYC* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1560 460 PANTHER ARGONAUTE1 1 429 - -
Vra2g1560 460 SMART Piwi_a_2 103 424 IPR003165 GO:0003676
Vra2g1560 460 Pfam Mid domain of argonaute 12 89 IPR032473 -
Vra2g1560 460 Gene3D - 172 460 IPR036397 GO:0003676
Vra2g1560 460 SUPERFAMILY Ribonuclease H-like 92 425 IPR012337 -
Vra2g1560 460 CDD Piwi_ago-like 1 423 IPR045246 -
Vra2g1560 460 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 1 429 - -
Vra2g1560 460 Pfam Piwi domain 104 423 IPR003165 GO:0003676
Vra2g1560 460 Gene3D - 1 166 - -
Vra2g1560 460 ProSiteProfiles Piwi domain profile. 103 424 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1560 Vra-Chr2 23502061 23505510 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1560 1 460 Eukaryotic Initiation Factors Gene Family AT5G43810 80.472 0.0 813
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1560 K11593 - gmx:100810235 907.901