Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1558 ATGAAGGGTTATGAGCCCCGTTCAAGCTCTTCATGTGCAGCTTGCAAGTTATTGAAGAGAAGATGCGTACCCAATTGTATTTTTGCACCTTACTTTAGGTCTGATGAGTGCAAGAAGTTTGCCAAGGTGCACAAGGTATTTGGAGCCAGTAATGTCAGCAAGATCTTGATCGAAGTGTCGGAAGATCAGAGAGAGGACACCGTCAATTCTCTCGCATATGAGGCCGAGGCAAGGCTCAGAGACCCCGTTTATGGATGCATTGGTGCCATAGCTCTGTTGCAGAGGAAGATGGTCGAGCTTCAACATGATCTCGCCATTGCTAAGGATCGACTTGCACGATGTCACGCTGCTGCTACTGTTCTCCCTTCTCCTGATATCTTGCATGCCCATGTTAGCCTCCCTCCATTCCCTGACTTTTGCACTTCCTCCAATGATTTCAATGATATCTTCTGCCACAGTTCGTCATCTCAATTATTAAGCCGCCACGAAACGGTCGATGATTTCAACCAAATCCCATATATATTTTAA 528 0.4602 MKGYEPRSSSSCAACKLLKRRCVPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVSEDQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAIAKDRLARCHAAATVLPSPDILHAHVSLPPFPDFCTSSNDFNDIFCHSSSSQLLSRHETVDDFNQIPYIF* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1558 175 Coils Coil 90 110 - -
Vra2g1558 175 PANTHER LOB DOMAIN-CONTAINING PROTEIN 21 1 169 - -
Vra2g1558 175 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Vra2g1558 175 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Vra2g1558 175 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1558 Vra-Chr2 23467961 23468846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1558 1 111 AS2 family AT3G11090 79.279 1.93e-62 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vra2g1558 LOB 2.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1558 - - gmx:100791250 342.043