Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1557 ATACCACCCTCTCCCACATCCACTTACAACACAAACCTAACATATGCTTCAAAGTTCAAACTACCCATTTCTCAGTTGCCAAAAATGGTGCGTGTCAAAGAAGCTCATGTTGTCACACCCTCAGACCCCACACCCAACACTGTCCTTGCACTCTCAGCACTCGACTCCCAACTCTTCTTGCGCTTCACAATCGAGTATCTCCTTCTTTACAGGCCCGCCCCGGGCCTCGACCGCCCTTCAACCGCCGCTCGTTTAAAAACCGCATTAGCTAAAGCCCTCGTTCCTTATTATCCATTTGCAGGAAGAGTCCGGCCCCAGCCTCAGGGGCTGGGCCTCGAGGTCGTTTGTCGGGCCCAGGGTGCTGTCTTCATCGAAGCCTCTTCCGAACGCTACAGTGTCAATGATTTCCAAAAGGCCCCCAAAACAGTGGCCCAATGGAGAAAGCTCTTATCCCTCTACGTCACTGACGTCCTCAAAGGCTCGCCGATTCTCGTCGTCCAGCTCACCTGGCTCGCCGACGGAGCCGCCGCCGTCGGCGTCGGAATCAACCACTGCATCTGCGACGGCATCGGGAGCGCTGAGTTTCTGAATTATTTCTCCGATTTAGCCTCGGAGAAATGTCAGGGTCTGGGTCTCGGTGTGAGTGTGGATCCGAAGCCGAAACCGGTTTGGGATAGACATCTTCTGAATCCTGATAAGAGAAGCGAGGCGAATCCAGCTATGCATGCTGAGTTTTGTGGAGTTCCTGATTTGTGCGGGTTTATGAACCGTGTGACGAGCAGGCTGAAGCCTACTTGCATTGTGTTGGACGAGAGACGCATCGAGAAGCTGAAGCGCGCGTGCGGAGGAGAGTCGTGCACGTCCTTCGAGGTAGTGGCCGCGCACGTGTGGAGGAGCTGGGCTCGGGCGTTAGGGTTTCCGAAGAACCAGACGCTGAAGCTTTTGTTCAGCGTGAACGTGCGGAAGCGAGTGAAGCCGGGTTTGCCGGAGGGGTACTACGGGAACGCGTTTGTGTTGGGGTGCGCGCAGAGCAGCGCGTGGGAGTTGGGGGAGAGAGGGGTGGCTCACGTGTGGAGTGCGGTGAAGCGTGCGAAAGAGAGGGTGGATAGCGAGCACGTGCGGAGGGTTGTTGAGTTGGTTTCCGAGTCAAGGGCGAGTCCTGACTCGGTGGGGGTGCTGATTCTGTCGCAGTGGTCGAGGCTGGGTTTGGAGAGGGTTGAACTAGGAATGGGAAAGCCTCTGCATGTGGGACCCATTTGCTGCGATAGGTACTGTTTGCTTCTTCCGGTTACCGGTGAACGCCACAGCGTGAAGGTGATGGTGGCCGTCCCCACCGCCGCCGTTGACAATTTCCATCGCTTCCTCCGGGAATACAATTCATGA 1383 0.5625 IPPSPTSTYNTNLTYASKFKLPISQLPKMVRVKEAHVVTPSDPTPNTVLALSALDSQLFLRFTIEYLLLYRPAPGLDRPSTAARLKTALAKALVPYYPFAGRVRPQPQGLGLEVVCRAQGAVFIEASSERYSVNDFQKAPKTVAQWRKLLSLYVTDVLKGSPILVVQLTWLADGAAAVGVGINHCICDGIGSAEFLNYFSDLASEKCQGLGLGVSVDPKPKPVWDRHLLNPDKRSEANPAMHAEFCGVPDLCGFMNRVTSRLKPTCIVLDERRIEKLKRACGGESCTSFEVVAAHVWRSWARALGFPKNQTLKLLFSVNVRKRVKPGLPEGYYGNAFVLGCAQSSAWELGERGVAHVWSAVKRAKERVDSEHVRRVVELVSESRASPDSVGVLILSQWSRLGLERVELGMGKPLHVGPICCDRYCLLLPVTGERHSVKVMVAVPTAAVDNFHRFLREYNS* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1557 460 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 31 454 - -
Vra2g1557 460 Gene3D - 28 246 IPR023213 -
Vra2g1557 460 Gene3D - 256 457 IPR023213 -
Vra2g1557 460 Pfam Transferase family 29 452 - -
Vra2g1557 460 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 31 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1557 Vra-Chr2 23458866 23460364 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1557 30 457 Monolignol Biosynthesis Gene Families AT5G48930 27.876 5.19e-44 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1557 - - pvu:PHAVU_001G244800g 811.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1557 2 23458866 23460364 Vra6g0573 6 5024387 5026760 PCT