Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1552 ATGAACAAAAACTTGAAACCCAGCTGCTTCAGGGATCCTCTGTTCCTTCTGGCGTTCTGTTTGTTGTTTCAGAACTTTAGTTACGGTTGCTCTTTGAATGAAGAAGGTAAAGCTCTTCTGAAGTTCAAGCAGGGAATAGTAAGAGACCCTTTTGGTGCTTTGTCAAATTGGGTCAACGATGAAGTAGCAGTTAACCATTGTAATTGGTTTGGAGTTGAGTGCTCTGCTGGAAGGGTGGTAGTCTTGAATTTGAAAGACCTTTGTCTTGAAGGAAATCTGGTACCTGAGCTCGCGAACCTTGTTCACATAAAGTCCATAATTTTGCGGAACAACTCTTTTTATGGAATCATCCCTGAAGGAATTGCACACTTGAATGAATTGGAGGTTTTGGATTTGGGCTACAACAACTTCAGTGGACATCTACCCACAGATCTTGGGAATAATATTTCGCTAACAATCCTTTTGTTGGACAACAATGAACATCTCTGTGGTTTCTCTCCTGAAATTAATAAATTGATGTTGATTTCTGAATATCAAGTAGATGAAAGACAACTGAGTCTGGCAGCAAAAGTGCCAGCTTGTACAAGAAGATTCATCAAACGGCCCATTGGCAAAAATAAGAAAGGTTTAAGGAGGCTACTGCAATCTTCTCGTGATAGTCCTTTTAACCGTGCTGCTAATTTTCCTGATAGTCCTCCTCCATCTTCTTCAGCTCCCTCACCTGCCCCAGCAACACCACCACCGGTTGAGGAGCCAGCTTTCACTGATCGAAATGATTCTGCTTCTCCTTCTCCTTCTCTGTCTGAACCGCGCTCTACACCACCATCTGCAAGTGGCTCATCAGATAGCAATCTTGTTGCTATTTTGGCTGGAGTTATAGGTGGTGTTGTATTTCTTGTCATTTCAATCATTGGCATATATCTCTGCAAAACAAACAAGGTAGCTACTGTAAAACCTTGGGCGACAGGATTAAGTGGGCAGCTTCAGAAGGCATTCATAACAGGTGTGCCAAAGCTGAAGAGATCAGAGCTTGAAGCAGCATGTGAAGATTTTAGTAATGTAATTGGCACTTCTTCCATTGGTACAGTGTACAAAGGGACTTTATCCACTGGTGTTGAAATAGCCGTGGCCTCTGTTGCAGCGACATCATCAAAAGATTGGTCAAAGACTTTAGAAGCCCAGTTTAGGAAGAAGATAGATACATTATCAAAAGTGAACCACAAGAATTTTGTAAATCTTCTTGGACATTGTGAAGAAGACGAGCCTTTCACCAGAATGATGGTTTTTGAGTACGCCCCAAATGGAACACTCTTTGAGCATTTGCACATAAAAGAAGCTGAGCACTTGGATTGGGAAACAAGACTCAGAGTTGCCATGGGCATGGCTTACTGCCTACAACATGTGCACCAGTTGGAGCCTCCTTTGGTTATTGGCAACCTGAATTCTTCAGCGGTTCAACTCACGGATGATTGTGCTGCCAAAATCTCTGATTTGAGTTTCTTAACTGAAATAGCTTCAGCTGTGATGAAATCTTCTGCTAGACAACACCCTGACATGACCCCAGCAAGTAACATTTACAGTTTTGGTGTTATATTATTTGAAATGGTGTCAGGCAGGCTCCCTTATTCAGTGGACAATGATGGCTCACTTGATGACTGGGCTTCACAATATTTACATGGGGATCAACCCCTCGAAGAAATGGTGGATCCATCTCTGGCGTCCTTCCAACAAGAACAGCTGGAACAAGTTGATGCTTTGATCAAATCTTGTGTCCACCCTGATCCAAAGCAAAGACCAACTATGAAAGAAATTTGTGTGAGATTAAGAGAGATAACAAAAATAACACCCGAGGCAGCTGTTCCAAAACTTTCTCCACTTTGGTGGGCGGAGCTTGAGATTGCCTCGGTAAATGGAAACTGA 1920 0.425 MNKNLKPSCFRDPLFLLAFCLLFQNFSYGCSLNEEGKALLKFKQGIVRDPFGALSNWVNDEVAVNHCNWFGVECSAGRVVVLNLKDLCLEGNLVPELANLVHIKSIILRNNSFYGIIPEGIAHLNELEVLDLGYNNFSGHLPTDLGNNISLTILLLDNNEHLCGFSPEINKLMLISEYQVDERQLSLAAKVPACTRRFIKRPIGKNKKGLRRLLQSSRDSPFNRAANFPDSPPPSSSAPSPAPATPPPVEEPAFTDRNDSASPSPSLSEPRSTPPSASGSSDSNLVAILAGVIGGVVFLVISIIGIYLCKTNKVATVKPWATGLSGQLQKAFITGVPKLKRSELEAACEDFSNVIGTSSIGTVYKGTLSTGVEIAVASVAATSSKDWSKTLEAQFRKKIDTLSKVNHKNFVNLLGHCEEDEPFTRMMVFEYAPNGTLFEHLHIKEAEHLDWETRLRVAMGMAYCLQHVHQLEPPLVIGNLNSSAVQLTDDCAAKISDLSFLTEIASAVMKSSARQHPDMTPASNIYSFGVILFEMVSGRLPYSVDNDGSLDDWASQYLHGDQPLEEMVDPSLASFQQEQLEQVDALIKSCVHPDPKQRPTMKEICVRLREITKITPEAAVPKLSPLWWAELEIASVNGN* 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1552 639 Pfam Protein tyrosine and serine/threonine kinase 351 607 IPR001245 GO:0004672|GO:0006468
Vra2g1552 639 MobiDBLite consensus disorder prediction 232 250 - -
Vra2g1552 639 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Vra2g1552 639 SUPERFAMILY L domain-like 36 166 - -
Vra2g1552 639 PANTHER BNAA09G55080D PROTEIN 1 638 - -
Vra2g1552 639 Pfam Leucine rich repeat N-terminal domain 33 75 IPR013210 -
Vra2g1552 639 Gene3D Phosphorylase Kinase; domain 1 321 431 - -
Vra2g1552 639 Gene3D Ribonuclease Inhibitor 31 201 IPR032675 -
Vra2g1552 639 MobiDBLite consensus disorder prediction 257 280 - -
Vra2g1552 639 Gene3D Transferase(Phosphotransferase) domain 1 432 620 - -
Vra2g1552 639 PANTHER PROTEIN MALE DISCOVERER 2 1 638 - -
Vra2g1552 639 SUPERFAMILY Protein kinase-like (PK-like) 332 608 IPR011009 -
Vra2g1552 639 MobiDBLite consensus disorder prediction 220 280 - -
Vra2g1552 639 ProSiteProfiles Protein kinase domain profile. 349 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1552 Vra-Chr2 23419225 23423879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1552 15 610 Receptor kinase-like Gene Family AT5G16000 26.358 1.16e-46 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vra2g1552 PK_Tyr_Ser-Thr 1e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1552 - - gmx:100784541 1011.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1552 2 23419225 23423879 Vra6g0569 6 4987132 4991212 PCT