Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1547 ATGCTTTTAAGCTTTTACTCCCAAACCAAACAAGAAATTTTGCAGCTACCCTTTTTGTCCCGTAATCAAATGGCTGGGAATTCTCCATGTGCTTCATGCAAGCTTCTCAGACGAAGGTGTACCAAGGACTGCATCTTTGCTCCTTATTTCCCTTCCAATGACCCTCAAAAGTTCGCCTTAGTGCATAAGGTTTTTGGCGCTAGCAATGTTAGCAAAATGCTGCAGAGAGCAGATGCTGTGAGTAGTTTGGTGTACGAAGCACATGCAAGAGTTCGGGACCCTGTGTATGGCTGTGTTGGGGCCATATCCTATTTACAAAACCAGGTTTCTGAGCTTCAAATGCAGCTTGCAGTGGCTCAAGCAGAGATACTCTGCATCCAGATGCAACAGGAGCCAGTGATGCCAAATCCAGAAATGGAAAACCCAGATCACAAATCTTACCTTCTCCAGAATGAACTCCCTCAGTTTCTCAACTATGCCTCTTCTAGCAATGTAATTTATGATGCTGTCTCAAGAGACAACATTTATGGACATGATATGGTTTCCTGA 549 0.439 MLLSFYSQTKQEILQLPFLSRNQMAGNSPCASCKLLRRRCTKDCIFAPYFPSNDPQKFALVHKVFGASNVSKMLQRADAVSSLVYEAHARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQQEPVMPNPEMENPDHKSYLLQNELPQFLNYASSSNVIYDAVSRDNIYGHDMVS* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1547 182 Pfam Lateral organ boundaries (LOB) domain 29 120 IPR004883 -
Vra2g1547 182 ProSiteProfiles LOB domain profile. 28 123 IPR004883 -
Vra2g1547 182 Coils Coil 102 122 - -
Vra2g1547 182 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 24 175 - -
Vra2g1547 182 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 24 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1547 Vra-Chr2 23384313 23385331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1547 26 149 AS2 family AT2G30130 76.119 5.26e-67 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vra2g1547 LOB 6.7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1547 - - gmx:121173085 286.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1547 2 23384313 23385331 Vra6g0559 6 4889756 4890791 PCT